Detailed information NTG0038227

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BSUW23_RS18790
• Genome accession: NC_014479
• Coordinates: 3654849..3655994 (+)
• Length: 381 a.a.
• NCBI ID: WP_003222022.1
• Uniprot ID: -
• Organism: Bacillus spizizenii str. W23
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3649849..3660994

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSUW23_RS18765 (BSUW23_18480)	-	3649984..3651144 (+)	1161	WP_079996665.1	insulinase family protein	-
BSUW23_RS18770 (BSUW23_18485)	-	3651149..3652432 (+)	1284	WP_003222013.1	pitrilysin family protein	-
BSUW23_RS18775 (BSUW23_18490)	albG	3652429..3653130 (+)	702	WP_003222015.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
BSUW23_RS18780 (BSUW23_18495)	-	3653267..3654622 (-)	1356	WP_003222017.1	YncE family protein	-
BSUW23_RS18790 (BSUW23_18505)	rapF	3654849..3655994 (+)	1146	WP_003222022.1	response regulator aspartate phosphatase RapF	Regulator
BSUW23_RS18795 (BSUW23_18510)	phrF	3655978..3656097 (+)	120	WP_003222023.1	phosphatase RapF inhibitor PhrF	Regulator
BSUW23_RS18800 (BSUW23_18515)	speB	3656250..3657122 (-)	873	WP_003222025.1	agmatinase	-
BSUW23_RS18805 (BSUW23_18520)	speE	3657183..3658013 (-)	831	WP_003222027.1	spermidine synthase	-
BSUW23_RS18810 (BSUW23_18525)	-	3658215..3660290 (+)	2076	WP_003222029.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45659.13 Da
• Isoelectric Point: 5.5270

>NTDB_id=38227 BSUW23_RS18790 WP_003222022.1 3654849..3655994(+) (rapF) [Bacillus spizizenii str. W23]
MTGVISSSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGVLDYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFKKAYSMAKAENQPQLMGRTLYNIGLCKNSQSQYED
AVTYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHAYHSKGMAYSQKAGDSIYLSEFEFLKSLYLSGPDEEAI
QRFFDFLESKMLYADLEDFALDVAKYYHERENFQKASAYFLKVEQVRQLIQGGVRLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=38227 BSUW23_RS18790 WP_003222022.1 3654849..3655994(+) (rapF) [Bacillus spizizenii str. W23]
GTGACAGGTGTCATATCTTCTTCTTCCGTCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGAAGAGAAATCAAACAAGAGCTGGATCAAATGGAAGAAGACCAAGATCTTCATTTGTACTATT
CACTGATGGAATTCCGGCACAACCTGATGCTTGAGTACCTTGAACCACTAGAGAAAATGCGGATCGAGGAACAGCCGAGA
TTGTCAGATTTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGAGTCCTTGATTATTACTTTAATTTCTTCAG
AGGCATGTATGAGCTAGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTTAAAAAGGCCGAAAGCAAGTTGATATTTG
TTAAGGATCGAATAGAGAAGGCAGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAGGCATATGAAATATACAAAGAACATGAAGCTTACAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCTACCAATTTCTTAGATTTAAAACAATATGAGGATGCCATCTCACATTTTAAAAAAGCTTACTCTATGGCGAAAG
CTGAGAATCAGCCCCAATTAATGGGGAGAACATTGTACAACATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCGTAACATATTTCAAAAGAGCAATAGCTGTTTTTGAGGAATCTAACATTCTTCCTTCCCTGCCCCAAGCCTATTTTTT
AATTACACAAATTCATTATAAATTGGGAAAAATGGATAAAGCCCATGCATATCATAGTAAGGGAATGGCTTATTCTCAAA
AGGCCGGAGATTCAATCTATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCTGATGAAGAAGCAATT
CAAAGGTTCTTTGATTTCCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTCTTGATGTGGCAAAATATTA
TCATGAACGTGAAAATTTTCAAAAAGCTTCTGCTTATTTCCTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGATTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-207)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	96.063	100	0.961
rapC	Bacillus subtilis subsp. subtilis str. 168	57.632	99.738	0.575