Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   HFD82_RS15960 Genome accession   NZ_CP050914
Coordinates   3321969..3322379 (-) Length   136 a.a.
NCBI ID   WP_002017231.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DT-Ab007     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3316969..3327379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFD82_RS15930 (HFD82_15930) - 3317055..3317324 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  HFD82_RS15935 (HFD82_15935) rapZ 3317321..3318172 (-) 852 WP_000821671.1 RNase adapter RapZ -
  HFD82_RS15940 (HFD82_15940) panC 3318195..3319043 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  HFD82_RS15945 (HFD82_15945) panB 3319047..3319856 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  HFD82_RS15950 (HFD82_15950) folK 3319902..3320384 (-) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  HFD82_RS15955 (HFD82_15955) pcnB 3320381..3321844 (-) 1464 WP_001194207.1 polynucleotide adenylyltransferase PcnB -
  HFD82_RS15960 (HFD82_15960) comEA 3321969..3322379 (-) 411 WP_002017231.1 ComEA family DNA-binding protein Machinery gene
  HFD82_RS15965 (HFD82_15965) mazG 3322348..3323154 (-) 807 WP_168177440.1 nucleoside triphosphate pyrophosphohydrolase -
  HFD82_RS15970 (HFD82_15970) - 3323266..3324039 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  HFD82_RS15975 (HFD82_15975) - 3324084..3326390 (-) 2307 WP_000259109.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15654.89 Da        Isoelectric Point: 10.3828

>NTDB_id=382138 HFD82_RS15960 WP_002017231.1 3321969..3322379(-) (comEA) [Acinetobacter baumannii strain DT-Ab007]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=382138 HFD82_RS15960 WP_002017231.1 3321969..3322379(-) (comEA) [Acinetobacter baumannii strain DT-Ab007]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.794

100

0.978
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412