Detailed information NTG0382030

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FYA21_RS18800
• Genome accession: NZ_CP043180
• Coordinates: 1131954..1132814 (-)
• Length: 286 a.a.
• NCBI ID: WP_096640130.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain PG20180064
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1126954..1137814

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FYA21_RS05490 (FYA21_05490)	-	1127845..1129155 (+)	1311	WP_096640132.1	tetratricopeptide repeat protein	-
FYA21_RS05495 (FYA21_05495)	-	1129232..1129558 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
FYA21_RS05500 (FYA21_05500)	rlmB	1129660..1130409 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
FYA21_RS05505 (FYA21_05505)	-	1130445..1131359 (+)	915	WP_096640131.1	DMT family transporter	-
FYA21_RS05510 (FYA21_05510)	coaE	1131356..1131952 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
FYA21_RS18800 (FYA21_05515)	pilD	1131954..1132814 (-)	861	WP_096640130.1	prepilin peptidase	Machinery gene
FYA21_RS05520 (FYA21_05520)	pilC	1132814..1134040 (-)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
FYA21_RS05525 (FYA21_05525)	pilB	1134070..1135782 (-)	1713	WP_148745960.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FYA21_RS05530 (FYA21_05530)	tpiA	1136073..1136867 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
FYA21_RS05535 (FYA21_05535)	secG	1136880..1137209 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32148.58 Da
• Isoelectric Point: 7.1041

>NTDB_id=382030 FYA21_RS18800 WP_096640130.1 1131954..1132814(-) (pilD) [Acinetobacter baumannii strain PG20180064]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPVIELLTMLCSLVVVMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSTNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=382030 FYA21_RS18800 WP_096640130.1 1131954..1132814(-) (pilD) [Acinetobacter baumannii strain PG20180064]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
CAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGTCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCAACCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Acinetobacter baumannii D1279779	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441