Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BSUW23_RS12365 Genome accession   NC_014479
Coordinates   2409396..2409731 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus spizizenii str. W23     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2404396..2414731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSUW23_RS12345 (BSUW23_12165) gcvT 2404984..2406072 (-) 1089 WP_003226353.1 glycine cleavage system aminomethyltransferase GcvT -
  BSUW23_RS12350 (BSUW23_12170) - 2406515..2408188 (+) 1674 WP_003226350.1 DEAD/DEAH box helicase -
  BSUW23_RS12355 (BSUW23_12175) - 2408209..2409003 (+) 795 WP_003226349.1 YqhG family protein -
  BSUW23_RS12360 (BSUW23_12180) sinI 2409189..2409362 (+) 174 WP_003226347.1 anti-repressor SinI Regulator
  BSUW23_RS12365 (BSUW23_12185) sinR 2409396..2409731 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  BSUW23_RS12370 (BSUW23_12190) tasA 2409825..2410610 (-) 786 WP_003226340.1 biofilm matrix protein TasA -
  BSUW23_RS12375 (BSUW23_12195) sipW 2410674..2411246 (-) 573 WP_003226338.1 signal peptidase I SipW -
  BSUW23_RS12380 (BSUW23_12200) tapA 2411230..2411991 (-) 762 WP_003226335.1 amyloid fiber anchoring/assembly protein TapA -
  BSUW23_RS12385 (BSUW23_12205) - 2412260..2412586 (+) 327 WP_079996407.1 YqzG/YhdC family protein -
  BSUW23_RS12390 (BSUW23_12210) - 2412628..2412807 (-) 180 WP_003226330.1 YqzE family protein -
  BSUW23_RS12395 (BSUW23_12215) comGG 2412879..2413253 (-) 375 WP_003226328.1 competence type IV pilus minor pilin ComGG Machinery gene
  BSUW23_RS12400 (BSUW23_12220) comGF 2413254..2413637 (-) 384 WP_032727308.1 competence type IV pilus minor pilin ComGF Machinery gene
  BSUW23_RS12405 (BSUW23_12225) comGE 2413663..2414010 (-) 348 WP_003226323.1 competence type IV pilus minor pilin ComGE Machinery gene
  BSUW23_RS12410 (BSUW23_12230) comGD 2413994..2414425 (-) 432 WP_003226321.1 competence type IV pilus minor pilin ComGD Machinery gene
  BSUW23_RS12415 (BSUW23_12235) comGC 2414415..2414711 (-) 297 WP_003226319.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=38194 BSUW23_RS12365 WP_003226345.1 2409396..2409731(+) (sinR) [Bacillus spizizenii str. W23]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=38194 BSUW23_RS12365 WP_003226345.1 2409396..2409731(+) (sinR) [Bacillus spizizenii str. W23]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment