Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   HB370_RS28195 Genome accession   NZ_CP050504
Coordinates   6168775..6170976 (+) Length   733 a.a.
NCBI ID   WP_030785191.1    Uniprot ID   A0ABW6Z0H9
Organism   Streptomyces sp. DSM 40868     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6163775..6175976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB370_RS28185 (HB370_28185) - 6164766..6168056 (-) 3291 WP_030785197.1 hypothetical protein -
  HB370_RS28190 (HB370_28190) - 6168053..6168331 (-) 279 Protein_5544 HSP90 family protein -
  HB370_RS28195 (HB370_28195) recG/mmsA 6168775..6170976 (+) 2202 WP_030785191.1 ATP-dependent DNA helicase RecG Machinery gene
  HB370_RS28200 (HB370_28200) rsmD 6171018..6171605 (+) 588 WP_030785187.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  HB370_RS28205 (HB370_28205) coaD 6171632..6172111 (+) 480 WP_030785184.1 pantetheine-phosphate adenylyltransferase -
  HB370_RS28210 (HB370_28210) - 6172169..6173284 (+) 1116 WP_030785181.1 hypothetical protein -
  HB370_RS28215 (HB370_28215) - 6173415..6174059 (+) 645 WP_030785179.1 DUF177 domain-containing protein -
  HB370_RS28220 (HB370_28220) rpmF 6174062..6174235 (+) 174 WP_003951102.1 50S ribosomal protein L32 -
  HB370_RS28225 (HB370_28225) rnc 6174255..6175157 (+) 903 WP_030785178.1 ribonuclease III -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 79194.83 Da        Isoelectric Point: 6.5410

>NTDB_id=381040 HB370_RS28195 WP_030785191.1 6168775..6170976(+) (recG/mmsA) [Streptomyces sp. DSM 40868]
MDGVPALQEPLKKVLGPATAKVMAEHLGLHTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHSFASAKA
PRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHKELLPGTRAMFAGKVSVFNRRLQLAHPAYELLRGDGEEAVESWAGALI
PIYPATAKLESWKIGKAVQTVLPSAQEALDPLPDSLRAGRGLLPLPEALLKIHRPHTKADIADARARLKWDEAFVLQVAL
ARRRHAETHLPAVPRVAGPDGLLAAFDDRLPFTLTEGQQKVSREIFDDLATSHPMHRLLQGEVGSGKTLVALRAMLAVVD
AGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGAEHATKVVLLTGSMGTAARRRALLDLATGEAGIVIGTHALIED
KVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAAD
KPHFLARAWERVREEVEAGHQAYVVCPRIGDEEEDPKKAGKKPAEGEEKRPPLAVLDVAEQLGRGPLKGLKVEVLHGRMH
PDDKDAVMRRFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPEASPARQ
RLNAVASTLDGFELSRIDLEQRREGDVLGQAQSGARSSLRVLAVIEDEEVIAEARAEAAAVVAADPELERLPGLRTALDA
LLDDEREQYLEKG

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=381040 HB370_RS28195 WP_030785191.1 6168775..6170976(+) (recG/mmsA) [Streptomyces sp. DSM 40868]
ATTGATGGCGTGCCCGCACTGCAAGAACCGCTCAAGAAGGTGCTCGGCCCCGCCACCGCGAAGGTGATGGCCGAGCACCT
CGGCCTGCACACCGTCGGCGATCTGCTGCACCACTACCCGCGCAGATACGAGGAGCGCGGTCAGCTCACCCACCTCGCCG
ACCTCCCCATGGACGAGCACGTCACGGTGGTCGCCCAGGTCGCCGACGCCCGGCTGCACAGCTTCGCCTCGGCCAAGGCC
CCCCGGGGCAAGGGCCAGCGCCTGGAGGTCACGATCACGGACGGCAGCGGCCGGCTCCAGCTCGTCTTCTTCGGCAACGG
CGTGCACAAGCCCCACAAGGAACTGCTGCCGGGCACCCGCGCGATGTTCGCCGGCAAGGTCTCCGTCTTCAACCGCCGCC
TCCAGCTCGCCCACCCGGCCTACGAGTTGCTGCGGGGCGACGGCGAGGAGGCCGTCGAGTCCTGGGCCGGAGCCCTGATC
CCGATCTACCCCGCGACCGCCAAACTGGAGTCCTGGAAGATCGGCAAGGCGGTCCAGACGGTGCTGCCCAGCGCCCAGGA
GGCCCTCGACCCGCTCCCGGACTCCCTGCGCGCCGGCCGCGGCCTGCTCCCGCTCCCCGAGGCCCTGCTCAAGATCCACC
GGCCGCACACCAAGGCCGACATCGCCGACGCCCGCGCCCGCCTGAAGTGGGACGAGGCATTCGTCCTCCAGGTCGCCCTG
GCCCGCCGCCGGCACGCCGAGACCCACCTGCCCGCCGTGCCCCGCGTCGCCGGCCCGGACGGCCTCCTCGCGGCCTTCGA
CGACCGCCTGCCCTTCACCCTCACCGAGGGCCAGCAAAAGGTCTCCCGCGAGATCTTCGACGACCTCGCCACTTCCCACC
CCATGCACCGCCTGCTCCAGGGGGAGGTGGGTTCGGGAAAGACACTGGTGGCCCTGCGCGCCATGCTCGCCGTCGTCGAC
GCGGGCGGGCAGGCGGCCATGCTCGCGCCCACCGAGGTGCTCGCCCAGCAGCACCACCGCTCCATCACCGAGATGATGGG
CGAGCTGGCCGAGGGGGGCATGCTGGGCGGCGCCGAGCACGCCACCAAGGTGGTGCTGCTGACCGGCTCGATGGGCACCG
CGGCCCGCCGCCGGGCCCTGCTCGACCTGGCCACCGGCGAGGCCGGCATCGTCATCGGCACCCACGCCCTGATCGAGGAC
AAGGTGCAGTTCCACGACCTCGGCCTGGTGGTGGTGGACGAACAGCACCGCTTCGGCGTGGAGCAGCGCGACGCCCTGCG
CGGCAAGGGCAAACAGCCCCCGCACCTGCTCGTCATGACGGCCACGCCCATCCCGCGCACGGTCGCCATGACGGTCTTCG
GCGACCTGGAGACCTCCGTGCTGGACCAGCTCCCGGCCGGCCGCTCCCCGATCGCCAGCCATGTCGTCCCGGCCGCCGAC
AAGCCCCACTTCCTCGCCCGCGCCTGGGAACGGGTCCGCGAGGAGGTCGAGGCCGGCCACCAGGCGTACGTGGTCTGTCC
GCGCATCGGTGACGAGGAGGAGGACCCGAAGAAGGCCGGCAAGAAGCCCGCCGAGGGCGAGGAGAAGCGGCCCCCGCTGG
CCGTGCTCGACGTGGCCGAGCAACTGGGCCGCGGCCCCCTCAAGGGCCTGAAGGTGGAGGTCCTGCACGGCCGTATGCAC
CCCGACGACAAGGACGCCGTGATGCGCCGCTTCGCGGCCGGCGAGACCGACGTCCTGGTGGCCACCACCGTCATCGAGGT
CGGCGTCAACGTCCCGAACGCCACGGCCATGGTCATCATGGACGCCGACCGCTTCGGCGTCTCCCAGCTCCACCAGCTGC
GCGGCCGGGTCGGCCGCGGCTCCGCCCCCGGCCTGTGCCTGCTGGTCACCGAGATGCCCGAGGCGAGCCCGGCCCGCCAG
CGGCTGAACGCGGTCGCCTCCACGCTCGACGGCTTCGAGCTGTCCCGCATCGACCTCGAACAGCGCCGCGAGGGCGACGT
CCTGGGCCAGGCCCAGTCCGGCGCCCGCTCCAGCCTGCGGGTCCTGGCCGTCATCGAGGACGAGGAGGTCATCGCGGAGG
CGAGAGCGGAGGCGGCGGCGGTCGTGGCGGCCGACCCGGAGCTGGAGCGTCTCCCGGGCCTGCGCACGGCCCTGGACGCC
CTGCTGGACGACGAGCGGGAGCAGTACCTGGAAAAGGGGTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(648-709)

Helicase conserved C-terminal domain (Helicase_C)

(545-620)

DEAD/DEAH box helicase (DEAD)

(296-448)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

37.309

98.363

0.367
  recG/mmsA Streptococcus pneumoniae R36A

37.309

98.363

0.367
  recG Bacillus subtilis subsp. subtilis str. 168

38.617

94.679

0.366
  recG Neisseria meningitidis strain C311

38.329

94.679

0.363

Multiple sequence alignment