Detailed information NTG0380429

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FXO12_RS13775
• Genome accession: NZ_CP043060
• Coordinates: 3055887..3056753 (+)
• Length: 288 a.a.
• NCBI ID: WP_057976746.1
• Uniprot ID: A0A4Q0HRA1
• Organism: Pseudomonas sp. J380
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3050887..3061753

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FXO12_RS13745 (FXO12_13745)	-	3051473..3051682 (-)	210	WP_160049699.1	AlpA family transcriptional regulator	-
FXO12_RS13750 (FXO12_13750)	-	3051798..3052547 (-)	750	WP_160049700.1	hypothetical protein	-
FXO12_RS13755 (FXO12_13755)	-	3052544..3053761 (-)	1218	WP_160049701.1	tyrosine-type recombinase/integrase	-
FXO12_RS13765 (FXO12_13765)	-	3054067..3054480 (-)	414	WP_057976751.1	pilin	-
FXO12_RS13770 (FXO12_13770)	pilC	3054682..3055890 (+)	1209	WP_057976748.1	type II secretion system F family protein	Machinery gene
FXO12_RS13775 (FXO12_13775)	pilD	3055887..3056753 (+)	867	WP_057976746.1	A24 family peptidase	Machinery gene
FXO12_RS13780 (FXO12_13780)	coaE	3056750..3057373 (+)	624	WP_057976744.1	dephospho-CoA kinase	-
FXO12_RS13785 (FXO12_13785)	yacG	3057370..3057570 (+)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
FXO12_RS13790 (FXO12_13790)	-	3057567..3057782 (-)	216	WP_003171680.1	hypothetical protein	-
FXO12_RS13795 (FXO12_13795)	-	3057847..3058536 (-)	690	WP_054919398.1	energy-coupling factor ABC transporter permease	-
FXO12_RS13800 (FXO12_13800)	-	3058665..3059294 (+)	630	WP_003188431.1	DUF1780 domain-containing protein	-
FXO12_RS13805 (FXO12_13805)	-	3059349..3059522 (+)	174	WP_034126248.1	DUF3094 family protein	-
FXO12_RS13810 (FXO12_13810)	-	3059583..3060881 (+)	1299	WP_032903990.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31732.92 Da
• Isoelectric Point: 7.1055

>NTDB_id=380429 FXO12_RS13775 WP_057976746.1 3055887..3056753(+) (pilD) [Pseudomonas sp. J380]
MSLLLSEHPWAFVGLALVLGLIVGSFLNVLAWRLPKMLEREWRAQAHEILDLPAEPGGPAYNLMHPNSCCPHCNQPIRPW
ENIPVLSYLLLRGRCAHCRDPIGLRYPLTELACALISTAVAWHFGFGWQAGAVMLLSWGLLGMSLIDLDHQLLPDVLVLP
LLWLGLILNSADLLTPLPDAVWGAVIGYMSLWCLFWLFKLATGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGVF
AGLILLRLRKAQVSAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=380429 FXO12_RS13775 WP_057976746.1 3055887..3056753(+) (pilD) [Pseudomonas sp. J380]
TTGAGCCTGCTGCTGAGCGAACATCCCTGGGCGTTTGTTGGCCTGGCGCTGGTGTTGGGCCTGATCGTCGGCAGCTTCCT
CAATGTGCTGGCGTGGCGCCTGCCCAAAATGCTCGAGCGGGAATGGCGTGCCCAGGCCCATGAGATTCTCGACTTGCCAG
CCGAGCCCGGTGGGCCGGCCTATAACCTGATGCACCCGAACTCCTGCTGCCCGCACTGCAATCAACCGATTCGGCCTTGG
GAAAATATCCCGGTGCTCAGCTACCTGCTGCTCCGCGGGCGTTGTGCCCACTGCCGCGACCCTATCGGCCTGCGTTACCC
CCTCACCGAACTCGCGTGCGCGCTGATCTCAACCGCTGTCGCCTGGCACTTCGGCTTCGGCTGGCAAGCCGGCGCGGTGA
TGCTGTTGAGTTGGGGCTTGCTGGGCATGAGCCTGATTGATCTGGACCACCAACTGCTGCCGGATGTGCTGGTGCTGCCG
CTGCTATGGCTGGGGCTGATCCTCAACAGTGCTGACCTGCTGACGCCACTGCCCGATGCAGTGTGGGGCGCGGTCATCGG
CTACATGAGCTTGTGGTGCCTGTTCTGGCTGTTCAAGCTGGCCACCGGCAAAGACGGCATGGGCCATGGCGACTTCAAGT
TATTGGCCTTGCTGGGAGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGATGGCCTCGCTGCTGGGCGTATTT
GCCGGGCTGATCCTGCTGCGTTTGCGTAAGGCCCAGGTGTCAGCGCCAATGCCGTTTGGCCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

3D structure

• AlphaFold DB: A0A4Q0HRA1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.004	98.264	0.521
pilD	Vibrio campbellii strain DS40M4	50	98.611	0.493
pilD	Neisseria gonorrhoeae MS11	50	93.75	0.469
pilD	Acinetobacter baumannii D1279779	47.985	94.792	0.455
pilD	Acinetobacter nosocomialis M2	47.253	94.792	0.448