Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FXO17_RS12680 Genome accession   NZ_CP043052
Coordinates   2637593..2638300 (+) Length   235 a.a.
NCBI ID   WP_002121606.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP43     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2632593..2643300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXO17_RS12660 (FXO17_12660) - 2635404..2636213 (+) 810 WP_002121535.1 M23 family metallopeptidase -
  FXO17_RS12665 (FXO17_12665) phnO 2636210..2636635 (-) 426 WP_005802684.1 GNAT family N-acetyltransferase -
  FXO17_RS12670 (FXO17_12670) - 2636732..2637154 (-) 423 WP_002121528.1 OsmC family protein -
  FXO17_RS12675 (FXO17_12675) - 2637233..2637352 (-) 120 WP_002121587.1 hypothetical protein -
  FXO17_RS12680 (FXO17_12680) crp 2637593..2638300 (+) 708 WP_002121606.1 cAMP-activated global transcriptional regulator CRP Regulator
  FXO17_RS12685 (FXO17_12685) tas 2638460..2639509 (+) 1050 WP_002121558.1 NADP(H)-dependent aldo-keto reductase -
  FXO17_RS12690 (FXO17_12690) - 2639564..2640343 (-) 780 WP_002121572.1 M48 family metallopeptidase -
  FXO17_RS12695 (FXO17_12695) - 2640459..2640776 (-) 318 WP_002121533.1 hypothetical protein -
  FXO17_RS12700 (FXO17_12700) purA 2640899..2642218 (-) 1320 WP_002121613.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26483.06 Da        Isoelectric Point: 4.5853

>NTDB_id=380381 FXO17_RS12680 WP_002121606.1 2637593..2638300(+) (crp) [Acinetobacter pittii strain AP43]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGLQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENTVSDDDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=380381 FXO17_RS12680 WP_002121606.1 2637593..2638300(+) (crp) [Acinetobacter pittii strain AP43]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTGCGTGAAGATGATGAACGTGAAATTGTTGTTGCGTATTTAAATCCGGGCGATTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCCGAAGTTCGAACTCGTGATGTCTGTGAAATTGCAGA
GATCTCTTATGACAACTTCCACGAACTTAGCAAACAATACCCAGACTTAAGCTATGCTGTTTTTGCACAATTAGTTCGCC
GTCTAAAAAATACGACTCGTAAAATGACAGATCTTGCGTTCATTGATGTGTCTGGCCGTATTGCACGTTGTTTAATCGAT
CTATCTTCTCAACCAGAAGCAATGATTTTGCCAAACGGTCTTCAAATTCGCATTACTCGTCAAGAAATTGGCCGTATTGT
TGGATGTTCGCGTGAGATGGTTGGCCGTGTACTCAAAACCTTAGAAGATCAAGGTATGATCCAAACTGATGGTAAAGCCA
TTCTTATTTTTGATGCATCATTAGAAGAAAACACTGTTTCTGATGATGACTACGACGATGAAGAATAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

97.021

100

0.97
  crp Vibrio cholerae strain A1552

47.317

87.234

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404

Multiple sequence alignment