Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   FXN57_RS09685 Genome accession   NZ_CP043005
Coordinates   1881461..1882141 (-) Length   226 a.a.
NCBI ID   WP_262404481.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain PN_696     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1876461..1887141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN57_RS09665 (FXN57_09660) rimI 1876612..1877055 (+) 444 WP_148324963.1 ribosomal protein S18-alanine N-acetyltransferase -
  FXN57_RS09670 (FXN57_09665) recC 1877057..1880446 (-) 3390 WP_148324961.1 exodeoxyribonuclease V subunit gamma -
  FXN57_RS09675 (FXN57_09670) comQ 1880492..1880794 (-) 303 WP_005554585.1 DUF5374 domain-containing protein Machinery gene
  FXN57_RS09680 (FXN57_09675) - 1880769..1881464 (-) 696 WP_148363561.1 DUF2572 family protein -
  FXN57_RS09685 (FXN57_09680) comO 1881461..1882141 (-) 681 WP_262404481.1 type II secretion system protein J Machinery gene
  FXN57_RS09700 (FXN57_09695) pal 1882635..1883102 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  FXN57_RS09705 (FXN57_09700) tolB 1883117..1884397 (-) 1281 WP_005544509.1 Tol-Pal system beta propeller repeat protein TolB -
  FXN57_RS09710 (FXN57_09705) tolA 1884432..1885616 (-) 1185 WP_148324949.1 cell envelope integrity protein TolA -
  FXN57_RS09715 (FXN57_09710) tolR 1885633..1886055 (-) 423 WP_005545585.1 colicin uptake protein TolR -
  FXN57_RS09720 (FXN57_09715) tolQ 1886141..1886830 (-) 690 WP_005545584.1 protein TolQ -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26227.92 Da        Isoelectric Point: 7.2203

>NTDB_id=380170 FXN57_RS09685 WP_262404481.1 1881461..1882141(-) (comO) [Aggregatibacter actinomycetemcomitans strain PN_696]
MISVALSSFLFLVIMQFYSQHQQQNREMLLRLQLQMELQRVIQLMGKDLARSGFRAVNNKLKQNNLALFEQENMPSAVTI
AQMNGEKNNSCVLFFYDLDANGCIGGNYKGDTCVVNGRNSTKEIERELFGYRLNQNMLETRLTYKSAVKQNCTQEECRRY
TQQSACHHGGWVDLLDEKEYEISQLSFDWLSEQKGIEIRLSGRFKQHKQIEYETSMIVPLLNGTKE

Nucleotide


Download         Length: 681 bp        

>NTDB_id=380170 FXN57_RS09685 WP_262404481.1 1881461..1882141(-) (comO) [Aggregatibacter actinomycetemcomitans strain PN_696]
ATGATTTCCGTGGCGCTTTCGAGCTTTTTATTTCTCGTCATCATGCAGTTTTATAGCCAACATCAGCAACAAAATCGGGA
AATGTTACTGCGTTTGCAGTTACAAATGGAATTACAACGCGTCATTCAATTAATGGGGAAAGATTTGGCAAGAAGCGGTT
TTCGTGCCGTGAATAATAAATTAAAGCAAAATAATCTCGCCTTATTCGAACAGGAAAATATGCCGTCAGCGGTGACCATT
GCCCAAATGAATGGTGAGAAAAATAACAGTTGCGTACTGTTCTTTTATGATCTCGATGCCAATGGTTGCATCGGTGGAAA
TTATAAAGGTGATACTTGCGTCGTGAACGGGCGTAACAGCACAAAAGAAATTGAGCGCGAATTATTCGGTTATCGACTTA
ACCAAAACATGCTGGAAACCCGTTTGACCTACAAAAGTGCGGTGAAGCAAAACTGCACACAAGAAGAATGCCGCCGTTAT
ACGCAACAATCCGCTTGTCATCACGGTGGTTGGGTAGATTTACTGGATGAGAAAGAATATGAAATTTCGCAGTTGAGTTT
TGATTGGCTGTCGGAACAGAAAGGAATTGAAATCCGCCTCAGCGGACGTTTTAAACAGCATAAACAGATCGAATATGAAA
CCTCTATGATCGTACCTTTATTGAACGGAACCAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

54.067

92.478

0.5

Multiple sequence alignment