Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   FXN57_RS09675 Genome accession   NZ_CP043005
Coordinates   1880492..1880794 (-) Length   100 a.a.
NCBI ID   WP_005554585.1    Uniprot ID   A0A142G259
Organism   Aggregatibacter actinomycetemcomitans strain PN_696     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1875492..1885794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN57_RS09660 (FXN57_09655) - 1876165..1876602 (+) 438 WP_148324966.1 DNA polymerase III subunit psi -
  FXN57_RS09665 (FXN57_09660) rimI 1876612..1877055 (+) 444 WP_148324963.1 ribosomal protein S18-alanine N-acetyltransferase -
  FXN57_RS09670 (FXN57_09665) recC 1877057..1880446 (-) 3390 WP_148324961.1 exodeoxyribonuclease V subunit gamma -
  FXN57_RS09675 (FXN57_09670) comQ 1880492..1880794 (-) 303 WP_005554585.1 DUF5374 domain-containing protein Machinery gene
  FXN57_RS09680 (FXN57_09675) - 1880769..1881464 (-) 696 WP_148363561.1 DUF2572 family protein -
  FXN57_RS09685 (FXN57_09680) comO 1881461..1882141 (-) 681 WP_262404481.1 type II secretion system protein J Machinery gene
  FXN57_RS09700 (FXN57_09695) pal 1882635..1883102 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  FXN57_RS09705 (FXN57_09700) tolB 1883117..1884397 (-) 1281 WP_005544509.1 Tol-Pal system beta propeller repeat protein TolB -
  FXN57_RS09710 (FXN57_09705) tolA 1884432..1885616 (-) 1185 WP_148324949.1 cell envelope integrity protein TolA -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11675.61 Da        Isoelectric Point: 10.6243

>NTDB_id=380169 FXN57_RS09675 WP_005554585.1 1880492..1880794(-) (comQ) [Aggregatibacter actinomycetemcomitans strain PN_696]
MILRLRKIDYKGMSLLSLLVTLSLFSGLFLTFNQWGNVQRKSAVEIYQRFQAIQIAENQHQRRFLGLPCESQVQQNQIRF
QVVCSQNQVSVKYPRGEISL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=380169 FXN57_RS09675 WP_005554585.1 1880492..1880794(-) (comQ) [Aggregatibacter actinomycetemcomitans strain PN_696]
ATGATTTTGCGGTTACGGAAAATTGATTACAAAGGCATGAGCCTATTGTCTTTGTTGGTTACGTTGAGCTTATTCAGCGG
GCTTTTTCTCACCTTCAATCAATGGGGCAATGTGCAACGAAAAAGTGCGGTGGAAATTTATCAGCGTTTTCAAGCCATCC
AAATTGCCGAAAATCAGCATCAACGCCGTTTCCTTGGATTGCCTTGTGAATCGCAGGTGCAGCAAAATCAAATTCGTTTT
CAGGTGGTTTGTTCGCAAAATCAGGTGTCGGTGAAATATCCTCGCGGTGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(61-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142G259

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

56.122

98

0.55

Multiple sequence alignment