Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   FRD49_RS17615 Genome accession   NZ_CP042994
Coordinates   3671985..3673115 (+) Length   376 a.a.
NCBI ID   WP_032012040.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain J1A     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3666985..3678115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRD49_RS17590 (FRD49_17590) - 3667246..3667452 (-) 207 WP_002054207.1 DUF4199 domain-containing protein -
  FRD49_RS17595 (FRD49_17595) - 3667506..3669620 (-) 2115 WP_106479637.1 TonB-dependent copper receptor -
  FRD49_RS17600 (FRD49_17600) - 3669692..3670120 (-) 429 WP_002054220.1 DUF2946 family protein -
  FRD49_RS17605 (FRD49_17605) def 3670157..3670687 (-) 531 WP_002054252.1 peptide deformylase -
  FRD49_RS17610 (FRD49_17610) tsaP 3670810..3671964 (+) 1155 WP_004711032.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  FRD49_RS17615 (FRD49_17615) dprA 3671985..3673115 (+) 1131 WP_032012040.1 DNA-processing protein DprA Machinery gene
  FRD49_RS17620 (FRD49_17620) - 3673166..3673735 (+) 570 WP_032012041.1 L-threonylcarbamoyladenylate synthase -
  FRD49_RS17625 (FRD49_17625) - 3674128..3675048 (-) 921 WP_079377500.1 DMT family transporter -
  FRD49_RS17630 (FRD49_17630) - 3675154..3675807 (-) 654 WP_081404501.1 TetR/AcrR family transcriptional regulator -
  FRD49_RS17635 (FRD49_17635) - 3675942..3677156 (+) 1215 WP_031982564.1 MFS transporter -
  FRD49_RS17640 (FRD49_17640) - 3677178..3677942 (+) 765 WP_032012043.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41795.31 Da        Isoelectric Point: 6.5812

>NTDB_id=380062 FRD49_RS17615 WP_032012040.1 3671985..3673115(+) (dprA) [Acinetobacter nosocomialis strain J1A]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGTCEKATQPDGLAKWSSLGLHANHLKRVNEFQTAQGQAQFEQLIQQV
QQHTDFILTLDDSGYPTQLLPYTDHPPVIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQSQNEETNTNTPEIP
VHLIDLYQSLDWVGQNIDQLVIHHNVSVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=380062 FRD49_RS17615 WP_032012040.1 3671985..3673115(+) (dprA) [Acinetobacter nosocomialis strain J1A]
ATGCTCACCCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAGCACTCATTAGTTAGTTTTAA
AAAAATTATCGATTATTTTGGAACTTGTGAAAAAGCAACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTTTGGGGTTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGGCACAAGGCCAAGCTCAGTTCGAACAGCTTATACAACAAGTT
CAGCAGCATACTGATTTTATTTTGACGTTAGATGACTCTGGCTACCCTACTCAATTACTCCCTTATACAGATCATCCACC
TGTTATTTTTGGAAAAGGTCAGGCACAGGCATTATTGCAACCACAAATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGTCAGGTGGCTTATGATTTTGCCTACTACTTAAGTGAAAAGGGCTTTTTTATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCAGCTCATCAAGGTGCATCCGCTCATCAACGTACAATTGCAGTCACGGGTACGGGCCTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTGGCAGAACATATTTTGGCTCAGAATGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CACCATTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGTGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGCAAAACCGTATTCGCTATTCCGGGTCATATTTA
TAGTGAGTTCCATCAAGGATGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTTGATCATCCCGAACAAATTATTGAAG
ACCTCGCCTTACCAACTCAATGGCAAAGCCAGCAACAAAGTCAAAATGAAGAAACCAATACGAATACTCCAGAAATTCCT
GTGCATTTGATTGATCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAATTCATCATAATGTTTC
GGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

95.745

100

0.957

  dprA Acinetobacter baumannii D1279779

95.745

100

0.957

  dprA Acinetobacter baylyi ADP1

70.866

100

0.718


Multiple sequence alignment