Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FRD49_RS12355 Genome accession   NZ_CP042994
Coordinates   2580536..2581243 (+) Length   235 a.a.
NCBI ID   WP_002156798.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain J1A     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2575536..2586243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRD49_RS12340 (FRD49_12340) - 2578355..2579161 (+) 807 WP_017393667.1 peptidoglycan DD-metalloendopeptidase family protein -
  FRD49_RS12345 (FRD49_12345) - 2579158..2579583 (-) 426 WP_025466154.1 GNAT family N-acetyltransferase -
  FRD49_RS12350 (FRD49_12350) - 2579674..2580096 (-) 423 WP_001195082.1 OsmC family protein -
  FRD49_RS12355 (FRD49_12355) crp 2580536..2581243 (+) 708 WP_002156798.1 cAMP-activated global transcriptional regulator CRP Regulator
  FRD49_RS12360 (FRD49_12360) - 2581404..2582453 (+) 1050 WP_032011697.1 NADP(H)-dependent aldo-keto reductase -
  FRD49_RS12365 (FRD49_12365) - 2582512..2583294 (-) 783 WP_017393664.1 M48 family metallopeptidase -
  FRD49_RS12370 (FRD49_12370) - 2583411..2583728 (-) 318 WP_002156849.1 hypothetical protein -
  FRD49_RS12375 (FRD49_12375) - 2583856..2585175 (-) 1320 WP_002156866.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26537.16 Da        Isoelectric Point: 4.6625

>NTDB_id=380044 FRD49_RS12355 WP_002156798.1 2580536..2581243(+) (crp) [Acinetobacter nosocomialis strain J1A]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEETPVTDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=380044 FRD49_RS12355 WP_002156798.1 2580536..2581243(+) (crp) [Acinetobacter nosocomialis strain J1A]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
GCGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGATGATGAGCGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCAGA
AATTTCATATGACAACTTCCATGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTTGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACTGACCTTGCCTTCATTGATGTGTCTGGTCGTATTGCGCGTTGCTTAATCGAC
TTATCTTCACAACCAGAGGCAATGATTTTGCCGAATGGTCGTCAAATTCGTATTACCCGTCAAGAAATTGGACGTATTGT
CGGTTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATCCAGACAGATGGTAAGGCTA
TTCTTATTTTTGATGCATCATTAGAAGAAACTCCGGTCACTGACGAAGACTATGATGACGAAGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

99.149

100

0.991
  crp Vibrio cholerae strain A1552

47.317

87.234

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404

Multiple sequence alignment