Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FWK62_RS07945 Genome accession   NZ_CP042993
Coordinates   1686121..1687341 (-) Length   406 a.a.
NCBI ID   WP_011608613.1    Uniprot ID   A0AAX2S4C7
Organism   Histophilus somni strain UOC-KLM-ATR-014     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1681121..1692341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK62_RS07915 (FWK62_07915) hpt 1681486..1682025 (-) 540 WP_011608620.1 hypoxanthine phosphoribosyltransferase -
  FWK62_RS07920 (FWK62_07920) raiA 1682229..1682546 (-) 318 WP_132994692.1 ribosome-associated translation inhibitor RaiA -
  FWK62_RS07925 (FWK62_07925) - 1682782..1684158 (-) 1377 WP_132994693.1 sodium:alanine symporter family protein -
  FWK62_RS07930 (FWK62_07930) yacG 1684559..1684753 (-) 195 WP_011608616.1 DNA gyrase inhibitor YacG -
  FWK62_RS07935 (FWK62_07935) coaE 1684750..1685397 (-) 648 WP_011608615.1 dephospho-CoA kinase -
  FWK62_RS07940 (FWK62_07940) - 1685417..1686124 (-) 708 WP_011608614.1 A24 family peptidase -
  FWK62_RS07945 (FWK62_07945) pilC 1686121..1687341 (-) 1221 WP_011608613.1 type II secretion system F family protein Machinery gene
  FWK62_RS07965 (FWK62_07965) gltX 1688030..1689472 (+) 1443 WP_132994694.1 glutamate--tRNA ligase -
  FWK62_RS07975 (FWK62_07975) - 1689811..1690545 (-) 735 WP_132994695.1 4'-phosphopantetheinyl transferase superfamily protein -
  FWK62_RS07980 (FWK62_07980) - 1690584..1690826 (-) 243 WP_132994696.1 hypothetical protein -
  FWK62_RS07985 (FWK62_07985) - 1691049..1692185 (-) 1137 WP_075319828.1 RNA-guided endonuclease TnpB family protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 46716.15 Da        Isoelectric Point: 9.7933

>NTDB_id=380019 FWK62_RS07945 WP_011608613.1 1686121..1687341(-) (pilC) [Histophilus somni strain UOC-KLM-ATR-014]
MQNLKLFSWKATNFLQQKQAGMLVIENVQEAKRYLLQQGLNNIYLQRHWQLNKKPKKIEFCDLLTQLAMLLQSSIPLKDS
LQILLRNCVNISLNQWVRYILKNLEGGLSFSQSVAQSGLYFSYQERQLISVGEMTGDLASVCQQIAEHRQQALALQRKIQ
KILLYPMIVLSISIILTALLLIFIVPQFAEMYGSNQSELPFFTQLLLNISSFLQQYFFHMIAVSILFFYLIKLRLHNSYS
FQLKKDWFLSHVPLLNKIIRLNRTISFCRSLGLMLNSGIPLQQSLYSFLPQNSINIQKKIEGDLTLINEVKLTLRGIEQG
YKFSQSVSSNLFSIQTQQMLQVGEKSGNLGLILQHIAENQQQQLDHQIDLLSQMLEPFMMVIIGGLIGLIMLGMYLPIFN
MGSLIQ

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=380019 FWK62_RS07945 WP_011608613.1 1686121..1687341(-) (pilC) [Histophilus somni strain UOC-KLM-ATR-014]
ATGCAGAATTTGAAGCTATTTTCTTGGAAAGCCACTAATTTTTTACAGCAAAAACAAGCTGGAATGCTTGTTATCGAAAA
TGTACAAGAGGCCAAACGCTATTTATTACAACAAGGGCTAAACAATATATATTTACAGCGTCATTGGCAACTGAATAAAA
AGCCTAAAAAAATAGAATTTTGTGATCTATTAACTCAACTAGCAATGTTATTACAATCCTCAATTCCTTTAAAAGATAGC
TTACAAATTTTATTGAGAAATTGTGTTAATATTTCTTTAAATCAATGGGTTAGATATATTTTAAAAAATCTTGAAGGAGG
ATTATCTTTTTCACAATCTGTGGCTCAATCAGGTCTATATTTTTCTTATCAAGAACGCCAACTCATTTCTGTTGGAGAAA
TGACGGGAGATTTAGCCTCTGTTTGCCAACAAATAGCAGAACATCGTCAGCAGGCATTAGCATTACAACGCAAAATTCAA
AAAATTTTACTCTATCCAATGATAGTTTTAAGTATTTCTATCATTCTCACCGCACTTCTATTAATTTTTATCGTGCCACA
ATTTGCCGAAATGTACGGTTCTAATCAATCCGAGCTTCCTTTTTTTACGCAACTATTGTTAAACATATCCTCTTTTTTAC
AACAGTATTTTTTTCATATGATAGCGGTATCTATTTTATTTTTTTATCTAATAAAATTACGTTTACACAATTCATATAGT
TTTCAACTCAAAAAAGATTGGTTTTTATCGCATGTGCCGTTGTTAAATAAAATTATTCGGCTTAATAGAACGATAAGTTT
TTGCCGTAGTTTAGGATTAATGCTCAACTCAGGCATTCCTTTACAACAAAGTCTATATTCTTTCCTTCCCCAAAACTCTA
TCAACATACAGAAAAAGATTGAGGGAGATCTCACGTTAATTAATGAAGTAAAGCTAACATTACGTGGTATCGAACAAGGA
TATAAATTCTCTCAGTCTGTAAGCAGTAATTTGTTTTCTATACAAACACAACAAATGCTACAAGTTGGTGAAAAGAGTGG
AAATCTAGGTTTAATTCTGCAACATATCGCAGAAAATCAGCAACAACAGTTAGATCATCAAATTGATTTACTTTCACAAA
TGTTAGAACCGTTTATGATGGTGATCATTGGCGGATTAATAGGCTTGATTATGTTAGGTATGTATTTACCAATCTTTAAT
ATGGGAAGTTTAATTCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

53.431

100

0.537
  pilC Haemophilus influenzae 86-028NP

53.102

99.261

0.527
  pilC Glaesserella parasuis strain SC1401

40.148

100

0.401

Multiple sequence alignment