Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | FWK50_RS08960 | Genome accession | NZ_CP042989 |
| Coordinates | 1983957..1984292 (+) | Length | 111 a.a. |
| NCBI ID | WP_012341067.1 | Uniprot ID | A0A9Q7E5D2 |
| Organism | Histophilus somni strain UOC-KLM-ATR-010 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1978957..1989292
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FWK50_RS08935 (FWK50_08935) | - | 1980282..1980761 (-) | 480 | WP_011608283.1 | Dps family protein | - |
| FWK50_RS08940 (FWK50_08940) | - | 1980914..1981483 (-) | 570 | WP_075293539.1 | anthranilate synthase component II | - |
| FWK50_RS08945 (FWK50_08945) | - | 1981540..1982547 (+) | 1008 | WP_075293540.1 | aminodeoxychorismate synthase component I | - |
| FWK50_RS08950 (FWK50_08950) | - | 1982696..1983277 (+) | 582 | WP_075293541.1 | aminotransferase class IV family protein | - |
| FWK50_RS08955 (FWK50_08955) | - | 1983338..1983727 (+) | 390 | WP_075293542.1 | RidA family protein | - |
| FWK50_RS08960 (FWK50_08960) | comE1/comEA | 1983957..1984292 (+) | 336 | WP_012341067.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| FWK50_RS08965 (FWK50_08965) | rdgB | 1984482..1985078 (+) | 597 | WP_075293543.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| FWK50_RS08970 (FWK50_08970) | hemW | 1985078..1986256 (+) | 1179 | WP_075293544.1 | radical SAM family heme chaperone HemW | - |
| FWK50_RS08975 (FWK50_08975) | rpiA | 1986352..1987011 (+) | 660 | WP_075293545.1 | ribose-5-phosphate isomerase RpiA | - |
| FWK50_RS08980 (FWK50_08980) | serA | 1987037..1988269 (+) | 1233 | WP_075293546.1 | phosphoglycerate dehydrogenase | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12138.14 Da Isoelectric Point: 10.2041
>NTDB_id=379924 FWK50_RS08960 WP_012341067.1 1983957..1984292(+) (comE1/comEA) [Histophilus somni strain UOC-KLM-ATR-010]
MKKITSFFKSLLMLSVALGAFNAFAETPTQPPSSAQATQQVEPVIISDKLNINTATAEEIKHALIGIGSKKAEAIVQYRE
KFGKFTAAEQLLEVKGIGKATLEKNRDRIIF
MKKITSFFKSLLMLSVALGAFNAFAETPTQPPSSAQATQQVEPVIISDKLNINTATAEEIKHALIGIGSKKAEAIVQYRE
KFGKFTAAEQLLEVKGIGKATLEKNRDRIIF
Nucleotide
Download Length: 336 bp
>NTDB_id=379924 FWK50_RS08960 WP_012341067.1 1983957..1984292(+) (comE1/comEA) [Histophilus somni strain UOC-KLM-ATR-010]
ATGAAAAAAATAACCTCATTTTTCAAATCATTATTGATGTTAAGTGTTGCTTTGGGGGCTTTTAATGCATTTGCAGAAAC
ACCAACTCAACCACCTAGTTCAGCCCAAGCAACACAACAAGTTGAACCGGTCATTATTAGCGATAAATTGAACATCAATA
CTGCAACAGCGGAAGAAATTAAACACGCTTTAATAGGAATTGGAAGCAAAAAAGCCGAGGCAATTGTTCAATATCGTGAA
AAATTTGGTAAATTTACCGCGGCTGAACAGTTACTTGAAGTCAAGGGGATTGGCAAAGCAACACTAGAAAAAAATAGAGA
TCGCATCATTTTCTAG
ATGAAAAAAATAACCTCATTTTTCAAATCATTATTGATGTTAAGTGTTGCTTTGGGGGCTTTTAATGCATTTGCAGAAAC
ACCAACTCAACCACCTAGTTCAGCCCAAGCAACACAACAAGTTGAACCGGTCATTATTAGCGATAAATTGAACATCAATA
CTGCAACAGCGGAAGAAATTAAACACGCTTTAATAGGAATTGGAAGCAAAAAAGCCGAGGCAATTGTTCAATATCGTGAA
AAATTTGGTAAATTTACCGCGGCTGAACAGTTACTTGAAGTCAAGGGGATTGGCAAAGCAACACTAGAAAAAAATAGAGA
TCGCATCATTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
60.36 |
100 |
0.604 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
53.333 |
100 |
0.577 |
| comEA | Vibrio cholerae C6706 |
44.954 |
98.198 |
0.441 |
| comEA | Vibrio cholerae strain A1552 |
44.954 |
98.198 |
0.441 |
| comEA | Vibrio campbellii strain DS40M4 |
43.269 |
93.694 |
0.405 |