Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FTX43_RS04565 Genome accession   NZ_CP042839
Coordinates   778289..778801 (+) Length   170 a.a.
NCBI ID   WP_002288368.1    Uniprot ID   -
Organism   Enterococcus sp. DA9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 773289..783801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FTX43_RS04555 gyrA 774936..777407 (+) 2472 WP_147606798.1 DNA gyrase subunit A -
  FTX43_RS04560 rpsF 777939..778238 (+) 300 WP_002288366.1 30S ribosomal protein S6 -
  FTX43_RS04565 ssb 778289..778801 (+) 513 WP_002288368.1 single-stranded DNA-binding protein Machinery gene
  FTX43_RS04570 rpsR 778827..779063 (+) 237 WP_002288370.1 30S ribosomal protein S18 -
  FTX43_RS04575 - 779205..781178 (+) 1974 WP_002313920.1 DHH family phosphoesterase -
  FTX43_RS04580 rplI 781184..781636 (+) 453 WP_002288372.1 50S ribosomal protein L9 -
  FTX43_RS04585 dnaB 781911..783278 (+) 1368 WP_002288373.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18451.99 Da        Isoelectric Point: 4.6742

>NTDB_id=378830 FTX43_RS04565 WP_002288368.1 778289..778801(+) (ssb) [Enterococcus sp. DA9]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=378830 FTX43_RS04565 WP_002288368.1 778289..778801(+) (ssb) [Enterococcus sp. DA9]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.353

0.388

Multiple sequence alignment