Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PSYTB_RS03645 Genome accession   NZ_CP042804
Coordinates   765784..767121 (-) Length   445 a.a.
NCBI ID   WP_010191854.1    Uniprot ID   -
Organism   Pseudomonas amygdali pv. tabaci str. ATCC 11528     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 760784..772121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYTB_RS03610 (PSYTB_03610) - 762692..763801 (-) 1110 WP_005777802.1 efflux RND transporter periplasmic adaptor subunit -
  PSYTB_RS03615 (PSYTB_03615) - 763883..764500 (-) 618 WP_005777803.1 TetR/AcrR family transcriptional regulator -
  PSYTB_RS03645 (PSYTB_03645) pilR 765784..767121 (-) 1338 WP_010191854.1 sigma-54 dependent transcriptional regulator Regulator
  PSYTB_RS03650 (PSYTB_03650) pilS 767124..768716 (-) 1593 WP_005777807.1 PAS domain-containing sensor histidine kinase Regulator
  PSYTB_RS03655 (PSYTB_03655) - 768706..768945 (-) 240 WP_002551997.1 PP0621 family protein -
  PSYTB_RS03660 (PSYTB_03660) - 769075..770097 (-) 1023 WP_005733851.1 outer membrane protein assembly factor BamD -
  PSYTB_RS03665 (PSYTB_03665) rluD 770247..771209 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSYTB_RS03670 (PSYTB_03670) pgeF 771206..771934 (+) 729 WP_046832873.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49773.79 Da        Isoelectric Point: 6.6378

>NTDB_id=378649 PSYTB_RS03645 WP_010191854.1 765784..767121(-) (pilR) [Pseudomonas amygdali pv. tabaci str. ATCC 11528]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRCARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTATNALKAGAFDFVTKPVDLGRLRELVNSALSLPCAQPARSIDSRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSVRSVGSQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LRRLAGNGTQPVARLNAQALDTLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQEHSGPSLADIDNLED
YLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=378649 PSYTB_RS03645 WP_010191854.1 765784..767121(-) (pilR) [Pseudomonas amygdali pv. tabaci str. ATCC 11528]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGACGAGCCGGATATCCGCGAACTGCTGGAGATCACTCTGGGGCGCAT
GAAACTCGACACCCGATGCGCCCGCAATGTTGCCGAGGCCCACGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGTCTGCCCGACGGCAATGGCCTTGAGCTGGTGCAGCATATTCAGCACGGCTACCCCCATGTGCCAGTGGCG
ATGATCACTGCCCACGGCAACCTGGACACCGCGACTAATGCGCTCAAGGCCGGGGCTTTCGATTTTGTGACCAAACCGGT
TGACCTCGGCAGGCTGCGCGAACTGGTCAATAGTGCGCTGAGCCTGCCTTGCGCCCAGCCAGCCCGCAGCATCGACAGCC
GCCTGCTGGGCGACTCGCTGGCGATGCGTACCTTGCGCAACCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAT
ATCAGTGGCGAATCGGGCAGTGGCAAGGAGCTTGTTGCGCGGCTGATCCACGAGCAGGGTCCGCGCATCGACAAACCGTT
CATACCGGTGAATTGCGGGGCCATTCCTTCCGAGCTGATGGAGAGTGAATTCTTTGGCCATCGCAAGGGCAGTTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAGGCGGCACATACCGGGACGCTGTTTCTCGACGAGGTGGCCGACCTACCA
CTGGCCATGCAGGTAAAGCTGTTGCGAGCCATCCAGGAAAAATCAGTCCGCAGTGTAGGCAGCCAGCAAGAGCAGATTGT
GGACGTACGCATTCTGTGCGCCACGCACAAGAACCTGAACGCAGAGGTAGCGGCAGGTCGCTTCCGCCAGGATCTGTATT
ACCGGTTGAACGTGATCGAAGTGCGCGTCCCCTCATTGCGCGAGAGGCGCGAGGACATCGATCAACTGGCAGCCAGTGTT
CTAAGGCGACTTGCTGGCAATGGCACGCAACCGGTGGCGCGCCTGAATGCGCAGGCGCTGGACACGCTGAAGAGCTACCG
ATTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCCTACACGCTCTGTGAAAACGATGAAATCCACGCCA
GCGATCTGCGCCTGGCAGAGTCCGCCAGCCCCCAGGAGCACAGCGGTCCTAGCCTGGCCGACATCGACAACCTTGAAGAT
TACCTGGAGAGCATCGAGCGCAAGCTGATTCTGCAGGCCCTGGAAGAAACCCGCTGGAACCGTACCGCAGCGGCAGAAAG
GCTCAGCTTGTCCTTCAGATCGCTGCGTTACCGGCTGAAGAAACTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.477

99.775

0.773
  pilR Acinetobacter baumannii strain A118

48.06

100

0.501
  luxO Vibrio cholerae strain A1552

37.162

99.775

0.371

Multiple sequence alignment