Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   FSZ17_RS15965 Genome accession   NZ_CP042593
Coordinates   3342717..3343787 (-) Length   356 a.a.
NCBI ID   WP_057771553.1    Uniprot ID   A0A5B8Z6D4
Organism   Cytobacillus dafuensis strain FJAT-25496     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3337717..3348787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSZ17_RS15925 (FSZ17_15920) - 3338636..3339430 (+) 795 WP_057771547.1 YqhG family protein -
  FSZ17_RS15930 (FSZ17_15925) - 3339511..3339696 (-) 186 WP_057772327.1 YqzE family protein -
  FSZ17_RS15935 (FSZ17_15930) comGG 3339808..3340191 (-) 384 WP_057771548.1 competence type IV pilus minor pilin ComGG -
  FSZ17_RS15940 (FSZ17_15935) comGF 3340178..3340642 (-) 465 WP_228460229.1 competence type IV pilus minor pilin ComGF -
  FSZ17_RS15945 (FSZ17_15940) - 3340611..3340943 (-) 333 WP_057771549.1 type II secretion system protein -
  FSZ17_RS15950 (FSZ17_15945) comGD 3340927..3341367 (-) 441 WP_057771550.1 competence type IV pilus minor pilin ComGD -
  FSZ17_RS15955 (FSZ17_15950) comGC 3341364..3341696 (-) 333 WP_057771551.1 competence type IV pilus major pilin ComGC -
  FSZ17_RS15960 (FSZ17_15955) comGB 3341699..3342730 (-) 1032 WP_057771552.1 competence type IV pilus assembly protein ComGB -
  FSZ17_RS15965 (FSZ17_15960) comGA 3342717..3343787 (-) 1071 WP_057771553.1 competence type IV pilus ATPase ComGA Machinery gene
  FSZ17_RS15970 (FSZ17_15965) - 3344052..3344753 (+) 702 WP_057771554.1 metalloregulator ArsR/SmtB family transcription factor -
  FSZ17_RS15975 (FSZ17_15970) - 3344859..3345104 (+) 246 WP_057771555.1 DUF2626 domain-containing protein -
  FSZ17_RS15980 (FSZ17_15975) - 3345150..3346220 (-) 1071 WP_057771556.1 class I SAM-dependent methyltransferase -
  FSZ17_RS15985 (FSZ17_15980) - 3346365..3347000 (-) 636 WP_057771557.1 MBL fold metallo-hydrolase -
  FSZ17_RS15990 (FSZ17_15985) - 3347089..3347580 (+) 492 WP_057771558.1 hypothetical protein -
  FSZ17_RS15995 (FSZ17_15990) - 3347681..3347854 (+) 174 WP_082625239.1 DUF2759 domain-containing protein -
  FSZ17_RS16000 (FSZ17_15995) - 3348145..3348462 (-) 318 WP_057771559.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40130.74 Da        Isoelectric Point: 9.4867

>NTDB_id=378591 FSZ17_RS15965 WP_057771553.1 3342717..3343787(-) (comGA) [Cytobacillus dafuensis strain FJAT-25496]
MNIIEKLAERIIKDAVRNQASDIHIVPRRKDTLIQLRLANKLIPRLYLPKEECDRLISHFKFTASMDIGEKRRPQSGAYS
YSVDGQMIGLRLSTLPSSHNESLVIRILPQQEQIPFFQISLFPAMTRKMLALLKHAHGLIIFTGPTGSGKTTTLYSLLNE
TSHMFNRNIITLEDPIEKDNDLVLQVQVNEKAGVSYAAGLKAILRHDPDIIMVGEIRDAETAKIAVRAALTGHLVLSTMH
TRDAKGAIYRLNEFGVNWLEIEQTLVAVTAQRLVELRCPFCQGECSPFCYSYGRWKRASVFELLAGRALNAAMMGAKGEK
SKVEYLTLKDVIKKGIALGYIKESEYERWVLDYAKA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=378591 FSZ17_RS15965 WP_057771553.1 3342717..3343787(-) (comGA) [Cytobacillus dafuensis strain FJAT-25496]
TTGAACATAATAGAAAAGCTCGCTGAAAGAATTATTAAAGATGCAGTAAGAAATCAAGCCTCAGACATTCATATTGTTCC
CCGAAGGAAAGACACACTCATCCAGTTGCGCCTCGCTAACAAATTAATTCCAAGACTGTATTTACCGAAAGAAGAATGTG
ACAGACTCATTTCCCATTTTAAATTTACAGCTTCCATGGACATTGGTGAAAAAAGACGGCCGCAAAGTGGGGCATACTCC
TATTCAGTAGATGGGCAAATGATTGGCCTTCGATTATCCACCCTTCCTTCCAGTCATAATGAAAGTCTCGTAATCAGAAT
CCTCCCTCAGCAGGAACAAATTCCTTTTTTCCAAATCTCTTTATTCCCAGCTATGACACGAAAAATGCTCGCTTTATTGA
AGCATGCTCACGGATTAATTATATTCACTGGTCCGACCGGCTCAGGAAAGACTACAACATTGTACTCCCTTTTAAACGAA
ACCTCCCATATGTTCAATCGCAATATAATAACGCTAGAAGATCCAATAGAAAAAGATAATGATTTGGTTCTTCAAGTACA
AGTGAATGAAAAAGCAGGTGTCTCCTATGCTGCTGGGCTAAAGGCCATTCTTAGACATGATCCGGATATCATTATGGTGG
GTGAAATAAGAGATGCCGAAACGGCAAAAATCGCAGTTCGGGCAGCATTAACGGGACATCTTGTATTAAGTACAATGCAT
ACTAGGGATGCAAAGGGGGCTATCTACAGATTAAATGAATTCGGAGTTAACTGGCTCGAGATTGAACAAACGCTTGTTGC
AGTAACAGCACAAAGGCTTGTCGAGTTAAGGTGCCCATTTTGCCAGGGGGAGTGCTCTCCTTTCTGCTACAGCTATGGTA
GATGGAAGAGAGCAAGTGTTTTTGAGCTTCTTGCAGGGAGAGCGTTAAATGCAGCTATGATGGGTGCGAAGGGTGAAAAA
TCAAAGGTAGAATATTTAACATTGAAAGATGTCATTAAAAAGGGCATTGCTCTTGGGTATATCAAGGAATCTGAATATGA
GCGGTGGGTACTAGATTATGCGAAAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8Z6D4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.265

98.596

0.565
  pilB Glaesserella parasuis strain SC1401

39.155

99.719

0.39
  pilF Thermus thermophilus HB27

39.474

96.067

0.379

Multiple sequence alignment