Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   HPF32_RS02425 Genome accession   NC_017366
Coordinates   500575..501126 (+) Length   183 a.a.
NCBI ID   WP_000635147.1    Uniprot ID   -
Organism   Helicobacter pylori F32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 495575..506126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF32_RS02410 (HPF32_0463) cysS 495755..497152 (-) 1398 WP_000471408.1 cysteine--tRNA ligase -
  HPF32_RS02415 (HPF32_0464) murJ 497153..498613 (-) 1461 WP_000913465.1 murein biosynthesis integral membrane protein MurJ -
  HPF32_RS02420 (HPF32_0465) - 498706..500550 (+) 1845 WP_000051020.1 FapA family protein -
  HPF32_RS02425 (HPF32_0466) ruvA 500575..501126 (+) 552 WP_000635147.1 Holliday junction branch migration protein RuvA Machinery gene
  HPF32_RS02435 (HPF32_0468) - 501172..503991 (+) 2820 Protein_459 DUF3519 domain-containing protein -
  HPF32_RS02445 (HPF32_0470) - 504040..504402 (+) 363 WP_014535373.1 hypothetical protein -
  HPF32_RS02450 (HPF32_0471) - 504438..505574 (-) 1137 WP_000462023.1 potassium channel family protein -
  HPF32_RS02455 (HPF32_0472) rpmB 505724..505912 (-) 189 WP_001118998.1 50S ribosomal protein L28 -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20206.81 Da        Isoelectric Point: 9.4311

>NTDB_id=37827 HPF32_RS02425 WP_000635147.1 500575..501126(+) (ruvA) [Helicobacter pylori F32]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPTRNEVFLALESLGFKSAEINKV
LKTLKPHLSTEVAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=37827 HPF32_RS02425 WP_000635147.1 500575..501126(+) (ruvA) [Helicobacter pylori F32]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCACATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTCTATATGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCACCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGGCTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTAGCCCTACGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGTAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(140-181)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.443

100

0.934
  ruvA Bacillus subtilis subsp. subtilis str. 168

33.333

100

0.366

Multiple sequence alignment