Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   HB750_RS01065 Genome accession   NZ_CP050273
Coordinates   216031..216729 (+) Length   232 a.a.
NCBI ID   WP_002263491.1    Uniprot ID   Q8DSH0
Organism   Streptococcus mutans strain P1     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 211031..221729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB750_RS01040 (HB750_01040) gatC 211221..211523 (+) 303 WP_002263475.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  HB750_RS01045 (HB750_01045) gatA 211523..212989 (+) 1467 WP_002274738.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  HB750_RS01050 (HB750_01050) gatB 212989..214428 (+) 1440 WP_065868572.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  HB750_RS10480 - 214567..214980 (+) 414 Protein_208 transposase -
  HB750_RS10305 (HB750_01060) - 214973..215926 (+) 954 Protein_209 reverse transcriptase domain-containing protein -
  HB750_RS01065 (HB750_01065) scnR 216031..216729 (+) 699 WP_002263491.1 response regulator transcription factor Regulator
  HB750_RS01070 (HB750_01070) - 216747..218126 (+) 1380 WP_002266300.1 sensor histidine kinase -
  HB750_RS10485 - 218483..218604 (-) 122 Protein_212 helix-turn-helix domain-containing protein -
  HB750_RS01075 (HB750_01075) - 218712..219961 (-) 1250 Protein_213 ISL3-like element ISSmu2 family transposase -
  HB750_RS01080 (HB750_01080) - 220236..220394 (+) 159 WP_002268660.1 lacticin 481 family lantibiotic -
  HB750_RS01085 (HB750_01085) - 220421..220573 (+) 153 WP_002269377.1 lacticin 481 family lantibiotic -
  HB750_RS01090 (HB750_01090) - 220613..220768 (+) 156 WP_002296231.1 lacticin 481 family lantibiotic -
  HB750_RS01095 (HB750_01095) - 220962..221123 (+) 162 WP_002268661.1 type A2 lanthipeptide -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26106.25 Da        Isoelectric Point: 6.3461

>NTDB_id=377966 HB750_RS01065 WP_002263491.1 216031..216729(+) (scnR) [Streptococcus mutans strain P1]
MSFESQLLKKHILIVDDDTSLNQSIKEVLMSRGFNNISSAYSIDEGIDIFSVSKIDLIILDVMLPDGEGYLLAKYIRKSS
DVPILFLTAKNSPDDEIKGLDSGGDDFVTKPFLPKTLSYRIIALLRRSYKGESELIELTFCTIDLNNASVLKGNEHLSLT
PTEIQILRKLYVNKNHIVSTEAICDAVWGLENFGYEKSLMVHIRNIREKIEKNSSKPVHLITVKGLGYKLVI

Nucleotide


Download         Length: 699 bp        

>NTDB_id=377966 HB750_RS01065 WP_002263491.1 216031..216729(+) (scnR) [Streptococcus mutans strain P1]
GTGTCTTTTGAATCACAATTATTGAAAAAGCATATCCTAATCGTAGATGATGATACATCATTGAACCAGTCCATCAAAGA
GGTTTTGATGAGTCGAGGGTTTAACAATATCAGTTCTGCCTATAGTATAGATGAAGGGATTGATATTTTTTCGGTATCAA
AGATTGATTTGATCATACTGGATGTCATGTTGCCCGATGGGGAAGGTTATTTATTGGCCAAATACATTCGAAAATCGTCA
GATGTCCCTATTTTATTTTTAACCGCAAAAAATAGTCCCGATGATGAAATCAAAGGACTTGATTCAGGAGGAGATGATTT
TGTCACCAAACCATTTCTTCCCAAGACCCTGTCTTATAGGATTATAGCCTTACTGAGGCGATCCTACAAAGGTGAATCTG
AACTTATCGAACTTACTTTCTGCACCATTGATTTAAATAATGCCAGTGTTTTAAAAGGCAATGAACATCTATCACTGACC
CCAACAGAAATTCAGATTCTTCGCAAACTTTATGTCAATAAAAACCATATCGTCTCCACAGAAGCGATTTGCGATGCGGT
GTGGGGACTTGAAAACTTTGGATACGAAAAATCATTAATGGTACATATCCGCAATATCAGAGAAAAAATCGAGAAAAACT
CCTCAAAGCCAGTGCATCTCATTACAGTCAAGGGTCTCGGGTATAAGCTGGTCATTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DSH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

42.411

96.552

0.409
  vicR Streptococcus mutans UA159

37.826

99.138

0.375
  micA Streptococcus pneumoniae Cp1015

36.842

98.276

0.362