Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FGL72_RS02555 | Genome accession | NZ_CP042410 |
| Coordinates | 525385..525834 (+) | Length | 149 a.a. |
| NCBI ID | WP_040177056.1 | Uniprot ID | - |
| Organism | Leuconostoc citreum strain CBA3621 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 516460..561260 | 525385..525834 | within | 0 |
Gene organization within MGE regions
Location: 516460..561260
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGL72_RS02475 (FGL72_02475) | - | 516460..517638 (-) | 1179 | WP_085699756.1 | tyrosine-type recombinase/integrase | - |
| FGL72_RS02480 (FGL72_02480) | - | 518087..518536 (-) | 450 | WP_146992517.1 | hypothetical protein | - |
| FGL72_RS02485 (FGL72_02485) | - | 518606..519307 (-) | 702 | WP_146992518.1 | hypothetical protein | - |
| FGL72_RS02490 (FGL72_02490) | - | 519357..519776 (-) | 420 | WP_146992520.1 | ImmA/IrrE family metallo-endopeptidase | - |
| FGL72_RS02495 (FGL72_02495) | - | 519773..520123 (-) | 351 | WP_146992523.1 | helix-turn-helix domain-containing protein | - |
| FGL72_RS02500 (FGL72_02500) | - | 520376..520579 (+) | 204 | WP_146992525.1 | helix-turn-helix domain-containing protein | - |
| FGL72_RS02505 (FGL72_02505) | - | 520590..521381 (+) | 792 | WP_146992527.1 | phage antirepressor KilAC domain-containing protein | - |
| FGL72_RS02510 (FGL72_02510) | - | 521494..521706 (-) | 213 | WP_040177065.1 | heavy-metal-associated domain-containing protein | - |
| FGL72_RS02515 (FGL72_02515) | - | 521809..522078 (+) | 270 | WP_004900864.1 | hypothetical protein | - |
| FGL72_RS02520 (FGL72_02520) | - | 522156..522353 (+) | 198 | WP_040177063.1 | hypothetical protein | - |
| FGL72_RS02525 (FGL72_02525) | - | 522346..522543 (+) | 198 | WP_040177061.1 | helix-turn-helix domain-containing protein | - |
| FGL72_RS02530 (FGL72_02530) | - | 522533..522715 (+) | 183 | WP_040177059.1 | hypothetical protein | - |
| FGL72_RS02535 (FGL72_02535) | - | 522719..523519 (+) | 801 | WP_052437264.1 | conserved phage C-terminal domain-containing protein | - |
| FGL72_RS02540 (FGL72_02540) | - | 523523..523789 (+) | 267 | WP_040177058.1 | hypothetical protein | - |
| FGL72_RS02545 (FGL72_02545) | - | 523867..524778 (+) | 912 | WP_052437263.1 | DUF1351 domain-containing protein | - |
| FGL72_RS02550 (FGL72_02550) | - | 524775..525398 (+) | 624 | WP_040177057.1 | ERF family protein | - |
| FGL72_RS02555 (FGL72_02555) | ssb | 525385..525834 (+) | 450 | WP_040177056.1 | single-stranded DNA-binding protein | Machinery gene |
| FGL72_RS02560 (FGL72_02560) | - | 525846..526529 (+) | 684 | WP_040177054.1 | putative HNHc nuclease | - |
| FGL72_RS02565 (FGL72_02565) | - | 526538..526942 (+) | 405 | WP_004903903.1 | hypothetical protein | - |
| FGL72_RS02570 (FGL72_02570) | - | 527369..527779 (+) | 411 | WP_004903898.1 | DUF722 domain-containing protein | - |
| FGL72_RS02575 (FGL72_02575) | - | 528493..528684 (+) | 192 | WP_146992529.1 | hypothetical protein | - |
| FGL72_RS02580 (FGL72_02580) | - | 528668..529066 (+) | 399 | WP_146992531.1 | DUF2335 domain-containing protein | - |
| FGL72_RS02590 (FGL72_02590) | - | 529375..529827 (+) | 453 | WP_004907787.1 | cupin domain-containing protein | - |
| FGL72_RS02595 (FGL72_02595) | - | 529966..530165 (+) | 200 | Protein_511 | hypothetical protein | - |
| FGL72_RS02600 (FGL72_02600) | - | 530226..530759 (+) | 534 | WP_146992533.1 | HNH endonuclease | - |
| FGL72_RS02605 (FGL72_02605) | - | 530759..531073 (+) | 315 | WP_004907778.1 | hypothetical protein | - |
| FGL72_RS02610 (FGL72_02610) | - | 531326..531892 (+) | 567 | WP_139988227.1 | phage terminase small subunit P27 family | - |
| FGL72_RS02615 (FGL72_02615) | - | 531879..533759 (+) | 1881 | WP_139988226.1 | terminase TerL endonuclease subunit | - |
| FGL72_RS09940 (FGL72_02620) | - | 533759..533947 (+) | 189 | WP_420870279.1 | DUF1056 family protein | - |
| FGL72_RS02625 (FGL72_02625) | - | 533952..535103 (+) | 1152 | WP_146992535.1 | phage portal protein | - |
| FGL72_RS02630 (FGL72_02630) | - | 535100..535789 (+) | 690 | WP_139988224.1 | head maturation protease, ClpP-related | - |
| FGL72_RS02635 (FGL72_02635) | - | 535800..536963 (+) | 1164 | WP_139988223.1 | phage major capsid protein | - |
| FGL72_RS02640 (FGL72_02640) | - | 536974..537300 (+) | 327 | WP_012305284.1 | head-tail connector protein | - |
| FGL72_RS02645 (FGL72_02645) | - | 537293..537664 (+) | 372 | WP_139988222.1 | phage head closure protein | - |
| FGL72_RS02650 (FGL72_02650) | - | 537654..538070 (+) | 417 | WP_139988221.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| FGL72_RS02655 (FGL72_02655) | - | 538067..538441 (+) | 375 | WP_139988220.1 | DUF806 family protein | - |
| FGL72_RS02660 (FGL72_02660) | - | 538445..539095 (+) | 651 | WP_085699938.1 | phage tail protein | - |
| FGL72_RS02665 (FGL72_02665) | - | 539196..539624 (+) | 429 | WP_139988219.1 | phage tail tube assembly chaperone | - |
| FGL72_RS02675 (FGL72_02675) | - | 539834..545647 (+) | 5814 | WP_146992538.1 | phage tail tape measure protein | - |
| FGL72_RS02680 (FGL72_02680) | - | 545710..548067 (+) | 2358 | WP_139988217.1 | distal tail protein Dit | - |
| FGL72_RS02685 (FGL72_02685) | - | 548118..553700 (+) | 5583 | WP_146992540.1 | hypothetical protein | - |
| FGL72_RS02690 (FGL72_02690) | - | 553697..553906 (+) | 210 | WP_146992543.1 | hypothetical protein | - |
| FGL72_RS02695 (FGL72_02695) | - | 553969..554202 (+) | 234 | WP_139988214.1 | hypothetical protein | - |
| FGL72_RS09705 | - | 554202..554342 (+) | 141 | WP_180896877.1 | hypothetical protein | - |
| FGL72_RS02700 (FGL72_02700) | - | 554342..554800 (+) | 459 | WP_243130152.1 | hypothetical protein | - |
| FGL72_RS02705 (FGL72_02705) | - | 554800..555222 (+) | 423 | WP_139988212.1 | phage holin, LLH family | - |
| FGL72_RS02710 (FGL72_02710) | - | 555233..556192 (+) | 960 | WP_146992545.1 | lytic exoenzyme target recognition domain-containing protein | - |
| FGL72_RS02715 (FGL72_02715) | - | 556258..556806 (+) | 549 | WP_146992547.1 | hypothetical protein | - |
| FGL72_RS02720 (FGL72_02720) | - | 557103..557501 (+) | 399 | WP_040177025.1 | fluoride efflux transporter FluC | - |
| FGL72_RS02725 (FGL72_02725) | - | 557502..557846 (+) | 345 | WP_004903627.1 | fluoride efflux transporter FluC | - |
| FGL72_RS02730 (FGL72_02730) | - | 558826..559086 (-) | 261 | WP_004903626.1 | SemiSWEET family transporter | - |
| FGL72_RS02735 (FGL72_02735) | rarD | 559165..560058 (-) | 894 | WP_004904705.1 | EamA family transporter RarD | - |
| FGL72_RS02740 (FGL72_02740) | - | 560238..561260 (+) | 1023 | WP_004903622.1 | SGNH/GDSL hydrolase family protein | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 16508.17 Da Isoelectric Point: 5.2048
>NTDB_id=377744 FGL72_RS02555 WP_040177056.1 525385..525834(+) (ssb) [Leuconostoc citreum strain CBA3621]
MNQVNLIGRLSKDIEVRYTQSGKAVGSGSIAVNRRFRSANGERQADFINFVIWDKAAENLANFTHKGSQVRLGGEWQTRN
YENNNGQKVYVNELVVNAFDLLDPKAATQTQSNLDNVDPFAGQNTKQSPNPFAASGKTEIDISDDDLPF
MNQVNLIGRLSKDIEVRYTQSGKAVGSGSIAVNRRFRSANGERQADFINFVIWDKAAENLANFTHKGSQVRLGGEWQTRN
YENNNGQKVYVNELVVNAFDLLDPKAATQTQSNLDNVDPFAGQNTKQSPNPFAASGKTEIDISDDDLPF
Nucleotide
Download Length: 450 bp
>NTDB_id=377744 FGL72_RS02555 WP_040177056.1 525385..525834(+) (ssb) [Leuconostoc citreum strain CBA3621]
ATGAACCAAGTTAATTTAATCGGTCGTTTGTCAAAAGACATTGAAGTTAGATATACACAATCAGGAAAAGCGGTTGGAAG
TGGCTCAATCGCAGTTAATCGCCGCTTTAGAAGTGCTAATGGTGAGCGCCAAGCCGACTTTATCAACTTTGTTATCTGGG
ACAAGGCGGCTGAAAACTTAGCTAATTTCACACACAAAGGCTCACAGGTTAGGCTAGGTGGCGAGTGGCAAACACGCAAC
TATGAAAACAACAATGGCCAAAAAGTCTATGTGAATGAGTTGGTAGTCAATGCCTTTGATTTATTAGATCCAAAAGCTGC
GACACAGACACAAAGTAACTTGGATAACGTGGATCCGTTCGCCGGACAGAACACAAAGCAGTCACCTAATCCTTTTGCAG
CATCAGGAAAAACAGAAATTGACATTTCAGATGATGACTTGCCATTCTGA
ATGAACCAAGTTAATTTAATCGGTCGTTTGTCAAAAGACATTGAAGTTAGATATACACAATCAGGAAAAGCGGTTGGAAG
TGGCTCAATCGCAGTTAATCGCCGCTTTAGAAGTGCTAATGGTGAGCGCCAAGCCGACTTTATCAACTTTGTTATCTGGG
ACAAGGCGGCTGAAAACTTAGCTAATTTCACACACAAAGGCTCACAGGTTAGGCTAGGTGGCGAGTGGCAAACACGCAAC
TATGAAAACAACAATGGCCAAAAAGTCTATGTGAATGAGTTGGTAGTCAATGCCTTTGATTTATTAGATCCAAAAGCTGC
GACACAGACACAAAGTAACTTGGATAACGTGGATCCGTTCGCCGGACAGAACACAAAGCAGTCACCTAATCCTTTTGCAG
CATCAGGAAAAACAGAAATTGACATTTCAGATGATGACTTGCCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.577 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
44.767 |
100 |
0.517 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
39.865 |
99.329 |
0.396 |