Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   HB752_RS01065 Genome accession   NZ_CP050271
Coordinates   216029..216727 (+) Length   232 a.a.
NCBI ID   WP_002263491.1    Uniprot ID   Q8DSH0
Organism   Streptococcus mutans strain S1     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 211029..221727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB752_RS01040 (HB752_01040) gatC 211219..211521 (+) 303 WP_002263475.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  HB752_RS01045 (HB752_01045) gatA 211521..212987 (+) 1467 WP_002274738.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  HB752_RS01050 (HB752_01050) gatB 212987..214426 (+) 1440 WP_065868572.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  HB752_RS10295 (HB752_01060) - 214971..215924 (+) 954 Protein_208 reverse transcriptase domain-containing protein -
  HB752_RS01065 (HB752_01065) scnR 216029..216727 (+) 699 WP_002263491.1 response regulator Regulator
  HB752_RS01070 (HB752_01070) - 216745..218124 (+) 1380 WP_002266300.1 HAMP domain-containing sensor histidine kinase -
  HB752_RS01075 (HB752_01075) - 218703..219959 (-) 1257 WP_002277424.1 ISL3-like element ISSmu2 family transposase -
  HB752_RS01080 (HB752_01080) - 220234..220392 (+) 159 WP_002268660.1 lacticin 481 family lantibiotic -
  HB752_RS01085 (HB752_01085) - 220419..220571 (+) 153 WP_002269377.1 lacticin 481 family lantibiotic -
  HB752_RS01090 (HB752_01090) - 220611..220766 (+) 156 WP_002296231.1 lacticin 481 family lantibiotic -
  HB752_RS01095 (HB752_01095) - 220960..221121 (+) 162 WP_002268661.1 type A2 lanthipeptide -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26106.25 Da        Isoelectric Point: 6.3461

>NTDB_id=377730 HB752_RS01065 WP_002263491.1 216029..216727(+) (scnR) [Streptococcus mutans strain S1]
MSFESQLLKKHILIVDDDTSLNQSIKEVLMSRGFNNISSAYSIDEGIDIFSVSKIDLIILDVMLPDGEGYLLAKYIRKSS
DVPILFLTAKNSPDDEIKGLDSGGDDFVTKPFLPKTLSYRIIALLRRSYKGESELIELTFCTIDLNNASVLKGNEHLSLT
PTEIQILRKLYVNKNHIVSTEAICDAVWGLENFGYEKSLMVHIRNIREKIEKNSSKPVHLITVKGLGYKLVI

Nucleotide


Download         Length: 699 bp        

>NTDB_id=377730 HB752_RS01065 WP_002263491.1 216029..216727(+) (scnR) [Streptococcus mutans strain S1]
GTGTCTTTTGAATCACAATTATTGAAAAAGCATATCCTAATCGTAGATGATGATACATCATTGAACCAGTCCATCAAAGA
GGTTTTGATGAGTCGAGGGTTTAACAATATCAGTTCTGCCTATAGTATAGATGAAGGGATTGATATTTTTTCGGTATCAA
AGATTGATTTGATCATACTGGATGTCATGTTGCCCGATGGGGAAGGTTATTTATTGGCCAAATACATTCGAAAATCGTCA
GATGTCCCTATTTTATTTTTAACCGCAAAAAATAGTCCCGATGATGAAATCAAAGGACTTGATTCAGGAGGAGATGATTT
TGTCACCAAACCATTTCTTCCCAAGACCCTGTCTTATAGGATTATAGCCTTACTGAGGCGATCCTACAAAGGTGAATCTG
AACTTATCGAACTTACTTTCTGCACCATTGATTTAAATAATGCCAGTGTTTTAAAAGGCAATGAACATCTATCACTGACC
CCAACAGAAATTCAGATTCTTCGCAAACTTTATGTCAATAAAAACCATATCGTCTCCACAGAAGCGATTTGCGATGCGGT
GTGGGGACTTGAAAACTTTGGATACGAAAAATCATTAATGGTACATATCCGCAATATCAGAGAAAAAATCGAGAAAAACT
CCTCAAAGCCAGTGCATCTCATTACAGTCAAGGGTCTCGGGTATAAGCTGGTCATTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DSH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

42.411

96.552

0.409
  vicR Streptococcus mutans UA159

37.826

99.138

0.375
  micA Streptococcus pneumoniae Cp1015

36.842

98.276

0.362

Multiple sequence alignment