Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FGL77_RS04415 Genome accession   NZ_CP042392
Coordinates   888679..889233 (-) Length   184 a.a.
NCBI ID   WP_146988516.1    Uniprot ID   A0A5B8TFJ9
Organism   Loigolactobacillus coryniformis strain CBA3616     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 886779..897541 888679..889233 within 0
IS/Tn 887588..887839 888679..889233 flank 840


Gene organization within MGE regions


Location: 886779..897541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL77_RS04395 (FGL77_04395) - 886779..887534 (-) 756 WP_146988510.1 IS3 family transposase -
  FGL77_RS04400 (FGL77_04400) - 887588..887839 (-) 252 WP_146988511.1 transposase -
  FGL77_RS04405 (FGL77_04405) - 887948..888268 (+) 321 WP_186758309.1 tyrosine-type recombinase/integrase -
  FGL77_RS04410 (FGL77_04410) rpsR 888404..888649 (-) 246 WP_003680800.1 30S ribosomal protein S18 -
  FGL77_RS04415 (FGL77_04415) ssb 888679..889233 (-) 555 WP_146988516.1 single-stranded DNA-binding protein Machinery gene
  FGL77_RS04420 (FGL77_04420) rpsF 889274..889573 (-) 300 WP_003680796.1 30S ribosomal protein S6 -
  FGL77_RS04425 (FGL77_04425) gyrA 889896..892457 (-) 2562 WP_003677393.1 DNA gyrase subunit A -
  FGL77_RS04430 (FGL77_04430) gyrB 892585..894537 (-) 1953 WP_146988518.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  FGL77_RS04435 (FGL77_04435) recF 894756..895853 (-) 1098 WP_003677390.1 DNA replication/repair protein RecF -
  FGL77_RS04440 (FGL77_04440) yaaA 895853..896092 (-) 240 WP_010010457.1 S4 domain-containing protein YaaA -
  FGL77_RS04445 (FGL77_04445) dnaN 896402..897541 (-) 1140 WP_146988521.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19893.34 Da        Isoelectric Point: 4.7657

>NTDB_id=377645 FGL77_RS04415 WP_146988516.1 888679..889233(-) (ssb) [Loigolactobacillus coryniformis strain CBA3616]
MINRVVLIGRLTRDAELRYTSGGAAVASFTLAVNRQFTNRNGEREADFINCVMWRKSAENFTNFTHKGSLVGIEGRIQTR
NYDNAEGQRVYVTEVVADNFSLLESRSADEHRQSTGGGQSSGGYNNNNQSNGFSSSNNAFNSAPQSTTNPAPSNGPASSA
NSNPNDPFANNGESIDISDDDLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=377645 FGL77_RS04415 WP_146988516.1 888679..889233(-) (ssb) [Loigolactobacillus coryniformis strain CBA3616]
ATGATCAATCGAGTAGTCCTAATTGGACGTTTGACCCGGGATGCTGAATTACGTTATACCAGTGGTGGTGCAGCAGTTGC
TTCATTCACTTTAGCAGTTAATCGCCAGTTCACTAACCGTAATGGGGAACGTGAAGCTGACTTTATCAACTGTGTGATGT
GGCGTAAATCAGCCGAGAACTTTACTAATTTTACCCATAAAGGATCATTAGTAGGGATCGAAGGTCGGATTCAAACACGG
AATTATGACAACGCTGAAGGTCAACGTGTTTACGTGACTGAAGTTGTTGCCGATAACTTCTCATTGTTAGAATCACGTTC
TGCTGACGAACATCGTCAAAGTACTGGCGGTGGCCAAAGTTCTGGTGGTTATAACAATAATAATCAGTCTAACGGCTTTA
GCAGCAGTAACAACGCATTCAACTCAGCTCCTCAATCAACAACTAATCCGGCTCCTAGCAATGGTCCTGCCAGCAGCGCA
AATAGCAATCCGAATGATCCATTTGCAAATAATGGTGAATCGATTGATATTTCCGATGATGACTTGCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8TFJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

67.391

100

0.674
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.804

100

0.538

Multiple sequence alignment