Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FGL79_RS03540 Genome accession   NZ_CP042389
Coordinates   673489..674001 (-) Length   170 a.a.
NCBI ID   WP_146955135.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain CBA3617     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 663417..686897 673489..674001 within 0


Gene organization within MGE regions


Location: 663417..686897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL79_RS03495 (FGL79_03495) - 663417..664184 (-) 768 WP_004265824.1 ParA family protein -
  FGL79_RS03500 (FGL79_03500) noc 664197..665075 (-) 879 WP_004265810.1 nucleoid occlusion protein -
  FGL79_RS03505 (FGL79_03505) rsmG 665075..665815 (-) 741 WP_064776763.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  FGL79_RS03510 (FGL79_03510) - 666183..667529 (+) 1347 WP_069467796.1 nucleobase:cation symporter-2 family protein -
  FGL79_RS03515 (FGL79_03515) - 667701..668630 (-) 930 WP_003592463.1 IS30-like element ISLpl1 family transposase -
  FGL79_RS03520 (FGL79_03520) dnaB 668950..670353 (-) 1404 WP_172821848.1 replicative DNA helicase -
  FGL79_RS03525 (FGL79_03525) rplI 670498..670950 (-) 453 WP_064776768.1 50S ribosomal protein L9 -
  FGL79_RS03530 (FGL79_03530) - 670972..673002 (-) 2031 WP_069467795.1 DHH family phosphoesterase -
  FGL79_RS03535 (FGL79_03535) rpsR 673219..673458 (-) 240 WP_004265822.1 30S ribosomal protein S18 -
  FGL79_RS03540 (FGL79_03540) ssb 673489..674001 (-) 513 WP_146955135.1 single-stranded DNA-binding protein Machinery gene
  FGL79_RS03545 (FGL79_03545) rpsF 674041..674337 (-) 297 WP_004265809.1 30S ribosomal protein S6 -
  FGL79_RS03550 (FGL79_03550) gyrA 674580..677165 (-) 2586 WP_039098084.1 DNA gyrase subunit A -
  FGL79_RS03555 (FGL79_03555) gyrB 677224..679185 (-) 1962 WP_039098095.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  FGL79_RS03560 (FGL79_03560) recF 679231..680364 (-) 1134 WP_039098085.1 DNA replication/repair protein RecF -
  FGL79_RS03565 (FGL79_03565) yaaA 680371..680598 (-) 228 WP_064776770.1 S4 domain-containing protein YaaA -
  FGL79_RS03570 (FGL79_03570) dnaN 680836..681975 (-) 1140 WP_064776771.1 DNA polymerase III subunit beta -
  FGL79_RS03575 (FGL79_03575) dnaA 682156..683502 (-) 1347 WP_004265858.1 chromosomal replication initiator protein DnaA -
  FGL79_RS03580 (FGL79_03580) rpmH 684076..684216 (+) 141 WP_004265830.1 50S ribosomal protein L34 -
  FGL79_RS03585 (FGL79_03585) rnpA 684282..684644 (+) 363 WP_146955136.1 ribonuclease P protein component -
  FGL79_RS03590 (FGL79_03590) yidC 684712..685491 (+) 780 WP_052202651.1 membrane protein insertase YidC -
  FGL79_RS03595 (FGL79_03595) - 685977..686897 (-) 921 WP_069467910.1 IS30-like element ISLsa1 family transposase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18651.19 Da        Isoelectric Point: 4.6856

>NTDB_id=377587 FGL79_RS03540 WP_146955135.1 673489..674001(-) (ssb) [Latilactobacillus curvatus strain CBA3617]
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSIAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNNNQSNGSQQSGFTSPQQSGNPSAANNTQTDPFANNGQA
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=377587 FGL79_RS03540 WP_146955135.1 673489..674001(-) (ssb) [Latilactobacillus curvatus strain CBA3617]
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCTGTTGG
GACTTTCTCAATCGCAGTGAACCGTCAATTCACGAATGCCAATGGTGATCGTGAAGCAGACTTTATCAACTGTGTCATCT
GGCGTAAATCAGCGGAAAATTTCGCTAATTTCACTAAGAAAGGCTCACTAGTCGGAGTTGATGGCCGTCTACAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACCGAAGTGGTCGTTGATAACTTCTCATTGTTAGAATCACGGAC
AACAACGGAGCAACGGCAAGGGGATGGCGCAAGCCAAAACTTTAACAACAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAATCGGGTAATCCATCAGCTGCAAATAACACTCAAACCGATCCATTTGCAAATAATGGTCAAGCA
ATTGATATTTCAGATGATGATTTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

96.471

100

0.965
  ssbA Bacillus subtilis subsp. subtilis str. 168

56

100

0.576
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

62.353

0.371

Multiple sequence alignment