Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   FIP50_RS09590 Genome accession   NZ_CP050173
Coordinates   1971320..1971976 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain STB20-1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1966320..1976976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIP50_RS09560 (FIP50_09565) dcyD 1967199..1968185 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  FIP50_RS09565 (FIP50_09570) tcyL 1968200..1968868 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  FIP50_RS09570 (FIP50_09575) tcyN 1968865..1969617 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  FIP50_RS09575 (FIP50_09580) sdiA 1969847..1970569 (+) 723 WP_001154273.1 transcriptional regulator SdiA -
  FIP50_RS09580 (FIP50_09585) yecF 1970637..1970861 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  FIP50_RS09585 (FIP50_09590) yecU 1970848..1971024 (-) 177 WP_000590344.1 protein YecU -
  FIP50_RS23755 - 1971062..1971178 (-) 117 WP_071889271.1 transcriptional regulator -
  FIP50_RS09590 (FIP50_09595) letA 1971320..1971976 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  FIP50_RS09595 (FIP50_09600) uvrC 1971973..1973805 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  FIP50_RS09600 (FIP50_09605) pgsA 1973862..1974410 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FIP50_RS09620 (FIP50_09625) - 1975106..1975846 (-) 741 WP_034167755.1 hypothetical protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=377424 FIP50_RS09590 WP_000611335.1 1971320..1971976(+) (letA) [Escherichia coli strain STB20-1]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=377424 FIP50_RS09590 WP_000611335.1 1971320..1971976(+) (letA) [Escherichia coli strain STB20-1]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACTTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486

Multiple sequence alignment