Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HBA20_RS09945 Genome accession   NZ_CP050147
Coordinates   2078607..2078936 (+) Length   109 a.a.
NCBI ID   WP_033954833.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain A5803     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2073607..2083936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA20_RS09930 (HBA20_09955) - 2074336..2075280 (+) 945 WP_033954830.1 NAD-dependent epimerase/dehydratase family protein -
  HBA20_RS09935 (HBA20_09960) - 2075381..2076406 (+) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  HBA20_RS09940 (HBA20_09965) - 2076419..2078416 (+) 1998 WP_033954831.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  HBA20_RS09945 (HBA20_09970) comEA/comE1 2078607..2078936 (+) 330 WP_033954833.1 ComEA family DNA-binding protein Machinery gene
  HBA20_RS09955 (HBA20_09980) - 2079153..2080349 (-) 1197 WP_019485986.1 amino acid aminotransferase -
  HBA20_RS09960 (HBA20_09985) uvrB 2080537..2082549 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11341.27 Da        Isoelectric Point: 8.0459

>NTDB_id=377103 HBA20_RS09945 WP_033954833.1 2078607..2078936(+) (comEA/comE1) [Pseudomonas aeruginosa strain A5803]
MHLIKSALLLILFACLPFSASAAPVAVAKNPAAATTPATTVSLGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=377103 HBA20_RS09945 WP_033954833.1 2078607..2078936(+) (comEA/comE1) [Pseudomonas aeruginosa strain A5803]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGGCGGCCGCAACGACACCTGCGACGACCGTGTCGCTGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(45-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385
  comEA Vibrio cholerae C6706

36.937

100

0.376
  comEA Vibrio cholerae strain A1552

36.937

100

0.376