Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   HBA47_RS06570 Genome accession   NZ_CP050136
Coordinates   1234740..1236782 (-) Length   680 a.a.
NCBI ID   WP_154700159.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23332     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1229740..1241782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA47_RS06535 (HBA47_06550) dapC 1229913..1231091 (+) 1179 WP_019389223.1 succinyldiaminopimelate transaminase -
  HBA47_RS06540 (HBA47_06555) - 1231378..1232208 (+) 831 WP_208103201.1 DDE-type integrase/transposase/recombinase -
  HBA47_RS06545 (HBA47_06560) - 1232322..1232585 (+) 264 WP_154699942.1 transposase -
  HBA47_RS06550 (HBA47_06565) - 1232603..1232737 (+) 135 WP_154699964.1 transposase -
  HBA47_RS06555 (HBA47_06570) - 1232849..1233058 (+) 210 WP_208103202.1 hypothetical protein -
  HBA47_RS11205 - 1233032..1233118 (+) 87 Protein_1284 IS5/IS1182 family transposase -
  HBA47_RS06560 (HBA47_06575) - 1233478..1233915 (+) 438 WP_019389224.1 DMP19 family protein -
  HBA47_RS06565 (HBA47_06580) rdgB 1233967..1234563 (+) 597 WP_003785869.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  HBA47_RS06570 (HBA47_06585) recG 1234740..1236782 (-) 2043 WP_154700159.1 ATP-dependent DNA helicase RecG Machinery gene
  HBA47_RS06575 (HBA47_06590) ppk2 1236888..1237805 (-) 918 WP_038306731.1 polyphosphate kinase 2 -
  HBA47_RS06580 (HBA47_06595) - 1238320..1239150 (-) 831 WP_208103201.1 DDE-type integrase/transposase/recombinase -
  HBA47_RS06585 (HBA47_06600) rfbB 1239320..1240333 (-) 1014 WP_154700158.1 dTDP-glucose 4,6-dehydratase -
  HBA47_RS06590 (HBA47_06605) - 1240327..1240899 (-) 573 WP_019389228.1 aminodeoxychorismate/anthranilate synthase component II -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 75335.25 Da        Isoelectric Point: 8.3437

>NTDB_id=377053 HBA47_RS06570 WP_154700159.1 1234740..1236782(-) (recG) [Kingella kingae strain ATCC 23332]
MQADIRQKLKLTDNAATKLAKLHLHTAWDLALHLPLRYEDETQVVPIAAAPIGESCQVEGVVLHQEVQFKPRKQLIAQIQ
DESGSVLNLRFIHFYPNHQKQLAQGQTVRALGEIKRGYYGDEMIHPKIKSPEKSDLAQSLTPIYPTTNGLNQPTLRKVVQ
TALETVDLSEILPDNYLKKYQLIPLAQSLRTLHNPPPDWSLSMLTNGALPEWRRLKFDELLAQQLSMRLARQRRRAGNAR
ALVSTGKLSEKLLSYLPFDLTRAQKKVCAEIREDLAKPVPMYRLLQGDVGSGKTIVAALSALVALESDGVQVAIMAPTEI
LAEQHFIKFKQWFEPLGISVAWLSGSLKKKEKDQAKAALADGRIRVAVGTHALFQDDVLFHDLALVIVDEQHRFGVAQRL
ALKNKGSDVHQLMMSATPIPRTLAMSFFADLDVSSIDELPPNRTPIKTKLVNNLRRSEVEGFVLNTCQKGQQAYWVCPLI
EESEVLQLQTATDTLAELQAALPQLKIGLVHGRMKAAEKAAVMAEFISGSLNVLVATTVIEVGVDVPNASLMVIEHAERM
GLAQLHQLRGRVGRGAAASTCVLLFAEPLGQISKARLKVIYENTDGFEIARQDLEIRGPGEFLGARQSGAPMLRFADLQE
DLPLLEAAREVAVDLVAHRPDVVAKHLERWLGSREGFLAA

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=377053 HBA47_RS06570 WP_154700159.1 1234740..1236782(-) (recG) [Kingella kingae strain ATCC 23332]
ATGCAAGCCGACATCCGCCAAAAACTCAAATTAACCGACAACGCCGCCACCAAGCTCGCCAAACTGCATTTGCATACTGC
GTGGGATTTGGCGTTGCATTTGCCCTTGCGCTACGAAGACGAAACCCAAGTTGTGCCGATTGCCGCCGCGCCCATTGGCG
AATCGTGCCAAGTGGAAGGCGTTGTTTTGCATCAAGAAGTGCAGTTCAAACCGCGCAAACAGCTCATCGCCCAAATTCAA
GACGAATCGGGTTCGGTGCTGAATTTGCGTTTTATCCATTTTTACCCCAATCATCAAAAACAATTGGCGCAGGGGCAAAC
GGTTCGGGCGTTGGGCGAAATCAAGCGCGGTTATTATGGCGATGAAATGATACACCCAAAAATTAAATCGCCCGAAAAAT
CCGATTTAGCACAATCACTTACGCCTATTTACCCAACCACAAACGGGCTAAATCAACCCACATTGCGAAAAGTGGTGCAA
ACCGCTTTGGAAACGGTGGATTTATCAGAAATTTTGCCCGATAACTATTTGAAAAAATACCAACTTATTCCGTTGGCGCA
AAGTTTGCGGACGTTGCACAATCCACCGCCCGATTGGTCTTTGAGTATGCTGACCAATGGTGCGCTGCCTGAGTGGCGGC
GTTTGAAATTTGATGAATTGTTGGCGCAACAGCTTTCCATGCGATTGGCGCGACAACGGCGACGTGCTGGCAATGCGCGA
GCATTAGTATCAACTGGAAAATTATCCGAAAAATTATTGAGTTATCTGCCATTTGATTTGACCAGGGCGCAGAAAAAAGT
CTGTGCTGAAATCCGCGAAGATTTGGCAAAACCTGTGCCGATGTACCGTTTGTTGCAGGGCGATGTAGGCAGTGGCAAAA
CGATTGTGGCGGCGTTGTCGGCTTTGGTGGCGTTGGAGTCAGACGGCGTTCAGGTGGCGATTATGGCACCGACTGAAATT
TTGGCAGAACAACATTTTATTAAATTTAAACAATGGTTTGAGCCGTTAGGAATCAGCGTTGCGTGGCTTTCAGGCAGCCT
GAAAAAGAAAGAAAAAGACCAAGCCAAAGCTGCATTGGCGGATGGACGCATTCGCGTGGCGGTCGGGACACACGCTTTAT
TCCAAGATGATGTTTTATTTCATGATTTGGCGTTGGTGATTGTTGATGAACAGCACCGTTTTGGGGTGGCGCAGCGTTTG
GCATTGAAAAATAAGGGCAGCGATGTGCATCAGTTGATGATGTCGGCGACCCCGATTCCGCGCACTTTGGCGATGAGTTT
TTTTGCGGATTTGGACGTGTCGTCTATTGACGAATTGCCACCCAATCGTACACCCATTAAAACCAAATTAGTCAATAACT
TACGCCGTTCCGAAGTGGAAGGTTTTGTGTTGAACACTTGTCAAAAAGGGCAGCAGGCGTATTGGGTTTGCCCGCTTATT
GAAGAAAGCGAAGTTTTGCAGCTACAAACCGCAACCGACACGCTGGCGGAATTGCAGGCTGCTTTGCCGCAACTCAAAAT
TGGTTTGGTGCATGGGCGCATGAAAGCGGCGGAAAAAGCGGCGGTTATGGCGGAATTTATTTCAGGCAGCCTGAATGTTT
TGGTGGCGACAACCGTGATTGAAGTTGGCGTGGACGTGCCAAATGCGAGTTTGATGGTCATTGAACATGCGGAACGCATG
GGTTTGGCGCAGTTGCATCAGTTGCGCGGACGGGTAGGGCGTGGCGCGGCGGCGAGTACTTGCGTTTTGCTGTTTGCTGA
ACCGCTTGGACAGATTAGCAAAGCGCGTTTGAAAGTGATTTACGAGAACACAGACGGTTTTGAAATTGCGCGACAAGATT
TGGAAATTCGCGGGCCTGGCGAATTTTTGGGCGCGAGACAAAGCGGTGCACCGATGTTGCGGTTTGCGGATTTGCAAGAA
GATTTGCCGTTGTTGGAAGCGGCGCGAGAAGTGGCGGTGGATTTGGTGGCGCATCGCCCTGATGTGGTGGCGAAACATTT
GGAGCGGTGGTTGGGCAGCCGTGAAGGGTTTTTGGCGGCGTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(467-575)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(604-664)

DEAD/DEAH box helicase (DEAD)

(284-419)

RecG wedge domain (RecG_wedge)

(13-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

73.638

99.853

0.735
  recG/mmsA Streptococcus pneumoniae R6

40.148

99.265

0.399
  recG/mmsA Streptococcus pneumoniae R36A

40.148

99.265

0.399
  recG Bacillus subtilis subsp. subtilis str. 168

40.586

95.294

0.387

Multiple sequence alignment