Detailed information NTG0377033

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: HBA47_RS02590
• Genome accession: NZ_CP050136
• Coordinates: 484618..486891 (+)
• Length: 757 a.a.
• NCBI ID: WP_154699889.1
• Uniprot ID: -
• Organism: Kingella kingae strain ATCC 23332
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 479618..491891

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HBA47_RS02550 (HBA47_02560)	-	479870..480076 (-)	207	WP_003785517.1	hypothetical protein	-
HBA47_RS02555 (HBA47_02565)	-	480182..480727 (+)	546	WP_019389385.1	RNA pyrophosphohydrolase	-
HBA47_RS02560 (HBA47_02570)	rpsT	480788..481051 (-)	264	WP_003785519.1	30S ribosomal protein S20	-
HBA47_RS02565 (HBA47_02575)	-	481208..481690 (+)	483	WP_003785520.1	type IV pilin protein	-
HBA47_RS02570 (HBA47_02580)	-	481755..482831 (-)	1077	WP_038309393.1	AI-2E family transporter	-
HBA47_RS02575 (HBA47_02585)	dusA	482835..483908 (-)	1074	WP_154699888.1	tRNA dihydrouridine(20/20a) synthase DusA	-
HBA47_RS02580 (HBA47_02590)	-	483931..484134 (-)	204	WP_003785524.1	cold-shock protein	-
HBA47_RS02585 (HBA47_02595)	clpS	484319..484621 (+)	303	WP_003789543.1	ATP-dependent Clp protease adapter ClpS	-
HBA47_RS02590 (HBA47_02600)	clpC	484618..486891 (+)	2274	WP_154699889.1	ATP-dependent Clp protease ATP-binding subunit ClpA	Regulator
HBA47_RS02595 (HBA47_02605)	-	487018..487923 (+)	906	WP_003785531.1	hypothetical protein	-
HBA47_RS02600 (HBA47_02610)	recB	487933..491589 (+)	3657	WP_154699890.1	exodeoxyribonuclease V subunit beta	Machinery gene

Sequence

Protein

• Length: 757 a.a.
• Molecular weight: 83944.55 Da
• Isoelectric Point: 6.3701

>NTDB_id=377033 HBA47_RS02590 WP_154699889.1 484618..486891(+) (clpC) [Kingella kingae strain ATCC 23332]
MISSQLEPILQAMYEEARISRHELVGLEHLLLALIQGDPNVADALREHSAEFSLLLAHLRESIDENTPTYPPHIPSHKID
PQPTIGFQRVVQRAMIHVQQSSQTEVQAADLLLALMQEEESPAVFLLQLHGVERKDLLRYFSHGTSSLHSSQHHDDDDDS
NLADNPLEAYTVNLNAEVQAARIDPLIGRKMEMERVLQILCRRRKNNPLLVGEAGVGKTALAEGLAYLIEQKQVPEVLAN
ATVFALDMGALLAGAKYRGDFEARLKAVLKELVKVENAVLFIDEIHTVIGAGSTQGNNMDASNLLKPALAKGQLRCIGAT
TYEEYRTVFNKDHALSRRFQKIDVVEPTVAETVQILQGLRSMFEQHHSVEYLDEAFQAAAELSAKYINERFLPDKAIDII
DEAGAAQRIALPENRLTQINKAEIERIVAKIARIPETTVSHDDKQVLKTLADTLKRKVFGQDNAIEALVSAVKMSRSGLG
LPEKPIGSFLFSGPTGVGKTEVAKQLALELGVPLQRFDMSEYMEAHAVSRLIGAPPGYVGFEQGGLLTECINKQPHCVLL
LDEIEKAHRDIYNVLLQVMDAGKLTDNTGRSADFRNVIIIMTTNAGAEALSKPSFGFISKRERGDEMVDIKKLFTPEFRN
RLDAIIPFAPLSPEIIAKVVDKFLAQLAAQLADKKVVAEFGDAMRKHLAAKGFDPQMGARPMHRLIQEQIRKALADELLF
GKLTDGGFVLVDWDEKTQKAKLSFKKPRVSRKKAELA

Nucleotide

• Length: 2274 bp

>NTDB_id=377033 HBA47_RS02590 WP_154699889.1 484618..486891(+) (clpC) [Kingella kingae strain ATCC 23332]
ATGATTTCATCTCAATTAGAACCGATTTTGCAAGCCATGTATGAAGAGGCGCGTATCAGCCGTCATGAACTGGTGGGCTT
GGAGCATTTGCTGCTGGCTTTGATTCAGGGCGACCCCAATGTTGCTGATGCTTTGCGCGAACACAGCGCGGAATTTTCGT
TGCTGCTGGCACATTTGCGCGAAAGCATAGACGAAAACACGCCCACTTATCCGCCGCATATTCCCAGCCACAAGATTGAC
CCACAGCCGACTATTGGCTTTCAGCGCGTGGTGCAGCGAGCGATGATTCATGTGCAACAGTCATCGCAAACCGAAGTACA
GGCTGCCGATTTGTTGCTGGCGTTGATGCAGGAAGAAGAATCGCCTGCGGTATTTTTATTGCAACTGCATGGCGTGGAGC
GCAAAGATTTGTTGCGCTATTTTTCGCATGGCACAAGCAGCCTGCACTCATCGCAGCATCATGATGATGACGATGACAGC
AATCTTGCCGATAATCCATTGGAAGCCTACACCGTAAACCTGAATGCCGAAGTGCAGGCTGCTCGCATTGACCCCTTAAT
CGGGCGCAAAATGGAAATGGAGCGCGTATTGCAAATTTTGTGTCGCCGCCGCAAAAACAATCCGCTTTTGGTCGGCGAAG
CTGGCGTAGGTAAAACCGCATTGGCGGAAGGTTTGGCATATTTAATTGAACAAAAACAAGTGCCTGAAGTGTTGGCAAAT
GCAACTGTTTTCGCGTTGGACATGGGCGCGTTGTTGGCTGGCGCAAAATATCGTGGCGATTTTGAAGCGCGTTTGAAAGC
GGTGCTGAAAGAATTGGTAAAAGTGGAAAATGCGGTTTTATTTATTGATGAAATTCATACGGTTATCGGTGCAGGCAGCA
CGCAAGGCAACAATATGGACGCAAGCAATTTGCTCAAACCTGCGTTGGCGAAAGGGCAACTGCGCTGCATTGGCGCGACC
ACTTACGAAGAATATCGCACCGTGTTCAACAAAGACCACGCGCTGAGTCGCCGTTTTCAAAAAATTGATGTGGTTGAGCC
GACTGTGGCGGAAACGGTGCAAATTTTGCAAGGTTTGCGCTCGATGTTTGAGCAACATCACAGCGTTGAATATTTGGACG
AGGCGTTTCAGGCAGCCGCCGAATTGTCGGCAAAATACATCAACGAGCGTTTTTTGCCTGACAAAGCCATTGATATTATT
GACGAAGCAGGCGCGGCGCAACGAATCGCGCTGCCTGAAAATCGTTTAACGCAAATCAACAAGGCGGAAATTGAACGCAT
TGTCGCCAAAATCGCCCGAATCCCTGAAACAACGGTTTCGCACGATGACAAACAGGTTTTGAAAACGCTTGCCGATACGC
TGAAACGCAAAGTTTTTGGGCAGGATAATGCGATTGAAGCGCTGGTTTCTGCTGTAAAAATGTCGCGTTCAGGTTTGGGG
CTGCCTGAAAAACCGATTGGCAGTTTTTTGTTTAGCGGTCCGACTGGCGTTGGTAAAACGGAAGTGGCGAAACAGTTGGC
GTTGGAATTGGGTGTACCGTTGCAACGCTTTGATATGTCTGAATATATGGAAGCGCATGCGGTTTCCCGTTTGATTGGTG
CGCCACCAGGCTATGTGGGTTTTGAACAAGGCGGTTTGCTGACGGAATGTATTAACAAACAGCCGCATTGTGTTTTGCTG
CTGGACGAAATTGAGAAAGCGCACCGCGATATTTACAATGTGTTGCTGCAAGTGATGGACGCAGGCAAATTGACGGATAA
CACGGGACGCAGCGCGGATTTTCGCAATGTCATCATCATCATGACAACCAACGCAGGCGCGGAAGCGTTGAGCAAACCGA
GTTTTGGTTTTATCAGCAAACGCGAGCGCGGCGATGAAATGGTGGACATCAAAAAATTGTTTACGCCTGAATTTCGCAAT
CGTTTAGATGCGATTATTCCGTTTGCGCCGTTGTCGCCTGAAATCATTGCGAAAGTGGTGGATAAATTTTTGGCGCAGTT
GGCAGCGCAGTTGGCGGACAAAAAAGTGGTGGCGGAGTTTGGCGATGCGATGCGTAAACATTTGGCGGCAAAAGGTTTTG
ACCCACAAATGGGCGCACGTCCTATGCATCGTTTGATTCAAGAGCAAATTCGTAAGGCGTTGGCTGATGAGTTGCTGTTT
GGCAAATTGACGGACGGTGGTTTTGTGTTGGTGGATTGGGACGAGAAGACGCAGAAAGCGAAATTGTCGTTTAAAAAACC
GCGAGTTAGCCGCAAGAAAGCGGAATTGGCGTAA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (209-340)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (651-730)

• AAA lid domain (AAA_lid_9) (349-451)

• AAA domain (Cdc48 subfamily) (AAA_2) (484-645)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (14-46)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (111-138)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	38.066	100	0.411
clpA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	43.662	93.791	0.41