Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   HBA47_RS02600 Genome accession   NZ_CP050136
Coordinates   487933..491589 (+) Length   1218 a.a.
NCBI ID   WP_154699890.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23332     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 482933..496589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA47_RS02580 (HBA47_02590) - 483931..484134 (-) 204 WP_003785524.1 cold-shock protein -
  HBA47_RS02585 (HBA47_02595) clpS 484319..484621 (+) 303 WP_003789543.1 ATP-dependent Clp protease adapter ClpS -
  HBA47_RS02590 (HBA47_02600) clpC 484618..486891 (+) 2274 WP_154699889.1 ATP-dependent Clp protease ATP-binding subunit ClpA Regulator
  HBA47_RS02595 (HBA47_02605) - 487018..487923 (+) 906 WP_003785531.1 hypothetical protein -
  HBA47_RS02600 (HBA47_02610) recB 487933..491589 (+) 3657 WP_154699890.1 exodeoxyribonuclease V subunit beta Machinery gene
  HBA47_RS02605 (HBA47_02615) - 491743..492381 (+) 639 WP_019389381.1 NYN domain-containing protein -
  HBA47_RS02610 (HBA47_02620) - 492396..493355 (+) 960 WP_060536990.1 glycosyltransferase family 52 -
  HBA47_RS02615 (HBA47_02625) - 493352..494332 (+) 981 WP_038313202.1 glycosyltransferase -
  HBA47_RS02620 (HBA47_02630) orn 494510..495058 (+) 549 WP_003785534.1 oligoribonuclease -
  HBA47_RS02625 (HBA47_02635) - 495202..496074 (+) 873 WP_019389378.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 1218 a.a.        Molecular weight: 137934.98 Da        Isoelectric Point: 6.1735

>NTDB_id=377034 HBA47_RS02600 WP_154699890.1 487933..491589(+) (recB) [Kingella kingae strain ATCC 23332]
MSHDFTPLNVPLVATNLIEASAGTGKTWNISALFARLVLLEQMPVDKILVVTFTNAATAELKTRLRDRLGEALRVLHKMQ
APFGATEVQAACEQYAPKSADFMSKLVEQALQKESRERLMMRLKAALSQFDHAAIYTIHSFCQRVLQDFAFYCQVPFQIE
LDEDSTPSPIAAQDFWREQVAHHEQLAQIVYRHQKNPQQQAAALASFVGRTYLHTRPTAYTLRDWQAANEGFVRAWQDTA
NQLDAIESAWEKLQPSLPKNSYQSDDLKSYIQQCHDWKSAGCLPDVNIILKLFFNSKNENKFSLATLTDKAKKDFKGKQD
PDALDCLSRTWGEWANHAQILSASEGDVLINVAMDLLHAIRQQNEADKQKQPARQFDDLLLDVFNALQTNRTHATALAQA
MSRTWQVVLIDEFQDTDPLQYGIFSRAFMQSSLHTENAPTVFMVGDPKQAIYNFRGADIFAYLQAAENVSPEQRYTLRTN
FRSHARLVNSVGALFAKPQPFVLPNLAYETVQAHRSNSHLSPQEAAVRVRWLNDLSLDKTEKTDALQHTSAQWCASEIAY
ALHRAGQGELRLKDKPLHAGDMAVLVRTRQEGAMVQRELKCLNVQSVLLSRDSVFQEDEARAVYALLAFFLNPRQTAHLV
YVLAGCLFGYTAQQLWALQQDERALSEWADKASVALQKWQKVGVYAAVQHFLQQHDVIQNLLAAGNDRTLTNLGQVLELL
AAEEESGRLPAALYQWLQQEIAATQDGDSNENRALRLESDEQLVKIVTMHASKGLQYPIVYCPFVWRGKGNKGDDWQVLQ
GESGSTLLHKNQMTDADKEQAQKEWLSEDLRLLYVALTRAEEQLVLYLAAHENTHHHPFYYLLDGDAHKTWSGAKVPAHA
YRQIWQQFVQKQNAETTSFEWDETPQAALLWTQNGKSSLHIQSDSDTVYQAQTVATRHYAPVVFSSFTALSSHQHAPEAL
ANTDEAERKWDIAVQAALPSETTSLPIQNDDIWDVAHFPRGAKAGVCLHELLEYFPFGQPAEKHSERIVRVLNRHQIADA
ENWLPAVCDMLDKVRQTLLANGIRLCDLSRQEWLNEMAFLFEIEQFNLVDVQNWCKQMNLSPECVQAALSLTFRQLSGFL
NGFIDTLVYTQNQALVIDYKSNYLADYSPASLNPEIAKHHYYLQALIYAIAMARYLRSRQCCPDVIAVRYVFLRGVDGSS
QQGVWACDVPVASLAVWL

Nucleotide


Download         Length: 3657 bp        

>NTDB_id=377034 HBA47_RS02600 WP_154699890.1 487933..491589(+) (recB) [Kingella kingae strain ATCC 23332]
ATGAGCCACGATTTCACGCCCCTAAACGTTCCCCTTGTTGCCACCAATTTGATTGAAGCCAGCGCAGGTACAGGCAAAAC
ATGGAATATTTCCGCCTTGTTTGCCCGATTGGTGCTGCTGGAACAAATGCCTGTGGACAAAATTTTGGTCGTTACGTTTA
CCAACGCCGCCACCGCCGAACTCAAAACCCGATTGCGCGACCGTTTGGGCGAAGCCTTGCGCGTGTTGCACAAAATGCAA
GCTCCGTTTGGCGCAACCGAAGTGCAGGCTGCTTGCGAACAATACGCGCCCAAATCGGCAGATTTCATGAGCAAATTGGT
GGAACAAGCCCTGCAAAAAGAATCGCGCGAACGCTTAATGATGCGACTCAAAGCCGCGTTGAGCCAGTTTGACCACGCCG
CCATTTATACCATTCACAGCTTTTGTCAGCGCGTGTTGCAAGATTTCGCGTTTTATTGCCAAGTCCCTTTTCAAATTGAA
TTGGACGAAGACAGCACGCCCAGCCCGATTGCGGCGCAAGACTTTTGGCGCGAACAAGTGGCGCACCACGAACAACTGGC
GCAGATTGTGTATCGCCATCAAAAAAATCCACAGCAACAAGCCGCAGCATTGGCTTCGTTTGTGGGGCGAACTTATTTGC
ACACGCGCCCCACGGCATACACTTTGCGCGATTGGCAAGCAGCAAACGAAGGTTTTGTACGCGCATGGCAAGACACGGCA
AATCAGCTTGATGCGATTGAAAGCGCGTGGGAAAAATTGCAACCGAGTTTGCCCAAAAATAGCTATCAGTCCGATGATTT
AAAAAGCTATATCCAACAATGCCATGACTGGAAAAGTGCAGGCTGCTTGCCCGATGTAAACATTATTTTGAAGCTGTTTT
TTAATAGCAAAAACGAAAACAAATTCAGCCTTGCCACGCTAACCGACAAAGCCAAAAAAGACTTCAAAGGCAAACAAGAC
CCTGATGCTTTGGACTGTTTAAGCCGCACTTGGGGCGAATGGGCAAACCACGCACAAATCTTGTCAGCCAGCGAAGGCGA
TGTGTTGATTAACGTGGCAATGGATTTGCTCCACGCTATTCGCCAGCAAAACGAAGCCGACAAACAAAAGCAGCCTGCAC
GTCAATTTGACGATTTATTACTAGACGTGTTCAACGCGCTGCAAACCAATCGCACCCATGCCACCGCGTTGGCACAAGCC
ATGTCGCGCACTTGGCAAGTGGTGCTGATTGACGAATTTCAAGACACCGACCCGTTGCAATATGGCATTTTTTCTCGCGC
CTTTATGCAAAGCAGCCTGCACACCGAAAACGCGCCCACCGTGTTTATGGTTGGTGACCCAAAACAGGCAATTTACAATT
TTCGTGGCGCGGACATTTTTGCCTATTTGCAAGCCGCAGAAAACGTGTCGCCCGAACAACGCTACACTTTGCGTACCAAT
TTCCGCAGCCATGCGCGATTGGTCAACAGCGTGGGTGCATTGTTCGCCAAACCGCAACCGTTTGTGTTGCCCAATTTGGC
ATACGAAACCGTGCAAGCGCATCGATCAAACAGCCATTTGTCGCCCCAAGAAGCGGCGGTGCGCGTGCGTTGGCTCAACG
ATTTAAGTTTGGATAAAACCGAAAAAACCGATGCCTTGCAACACACGTCTGCCCAATGGTGCGCCAGTGAAATTGCCTAT
GCCTTGCATCGCGCAGGGCAGGGCGAATTGCGTTTAAAAGACAAACCGCTACACGCTGGCGATATGGCTGTGCTGGTGCG
AACCCGCCAAGAAGGCGCAATGGTGCAGCGTGAACTCAAATGCCTAAACGTGCAAAGCGTGTTGTTGAGCCGTGATAGCG
TGTTCCAAGAAGACGAAGCGCGTGCTGTGTATGCTTTGTTGGCGTTTTTCTTGAATCCGCGGCAAACGGCGCATTTGGTT
TATGTGCTTGCAGGCTGCTTGTTTGGCTACACCGCGCAACAGTTGTGGGCTTTGCAACAAGATGAACGCGCATTAAGCGA
ATGGGCAGACAAAGCGAGCGTTGCCTTGCAAAAATGGCAAAAAGTGGGCGTGTATGCAGCGGTGCAACATTTTTTGCAGC
AACACGATGTCATCCAAAACCTGCTCGCTGCTGGCAACGACCGCACTTTGACCAATTTGGGGCAAGTGCTGGAATTGCTG
GCTGCCGAAGAAGAAAGCGGACGTTTGCCAGCCGCCTTGTATCAATGGTTGCAACAAGAAATCGCTGCCACGCAAGATGG
CGACAGCAACGAAAACCGCGCCTTGCGACTGGAAAGCGATGAGCAACTGGTCAAAATTGTAACCATGCATGCATCAAAAG
GCTTGCAATATCCGATTGTGTATTGCCCGTTTGTGTGGCGTGGCAAAGGCAACAAGGGCGACGATTGGCAAGTGTTGCAA
GGCGAATCGGGCAGCACTTTGTTGCACAAAAACCAAATGACCGATGCCGACAAAGAACAAGCGCAAAAAGAGTGGTTGTC
GGAAGATTTGCGTTTGCTGTATGTGGCTTTGACTCGCGCCGAAGAGCAATTGGTGCTGTATTTGGCGGCACACGAAAACA
CGCATCATCACCCGTTTTATTATTTGTTAGACGGTGATGCGCACAAAACATGGTCTGGTGCAAAAGTGCCAGCGCACGCC
TATCGCCAAATTTGGCAACAATTCGTACAGAAGCAAAACGCAGAAACTACCAGCTTTGAATGGGACGAAACACCGCAGGC
TGCTTTGTTGTGGACGCAAAACGGCAAAAGCAGCCTGCACATTCAGTCGGATAGCGACACGGTTTATCAAGCGCAAACCG
TTGCCACGCGCCATTATGCGCCAGTTGTGTTTAGCAGTTTTACCGCGTTGAGTTCGCATCAACACGCGCCCGAAGCGTTG
GCAAACACAGACGAAGCCGAGCGCAAATGGGACATTGCGGTGCAGGCTGCTTTACCCAGCGAAACGACATCGCTACCAAT
CCAAAACGATGATATTTGGGACGTGGCGCATTTTCCGCGTGGCGCAAAAGCAGGCGTGTGTTTGCACGAATTGCTGGAAT
ATTTTCCGTTTGGTCAGCCAGCCGAAAAACACAGCGAGCGCATTGTGCGCGTGCTGAACCGCCATCAAATTGCCGATGCC
GAAAACTGGCTGCCTGCCGTGTGTGATATGCTAGACAAAGTGCGCCAAACACTGCTGGCAAACGGCATTCGTTTGTGCGA
TTTGTCGCGCCAAGAGTGGCTTAACGAAATGGCATTTTTGTTTGAAATAGAACAATTTAATTTGGTTGATGTGCAAAACT
GGTGCAAGCAAATGAACTTGTCACCCGAATGTGTGCAGGCTGCTTTGTCGCTCACGTTCCGCCAGTTAAGCGGTTTTTTG
AATGGCTTTATCGACACGCTGGTTTACACGCAAAATCAAGCATTGGTGATTGACTACAAATCCAATTATTTGGCGGATTA
TTCGCCTGCGTCGCTGAATCCAGAAATCGCCAAGCATCACTATTATTTGCAAGCCTTGATTTATGCGATTGCTATGGCGC
GTTATCTTCGTAGCCGCCAATGTTGCCCCGATGTGATTGCGGTACGCTATGTGTTTTTACGCGGCGTGGACGGCAGCAGC
CAACAAGGCGTGTGGGCGTGTGATGTGCCTGTGGCTTCGTTGGCGGTGTGGTTGTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(475-847)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(14-468)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1005-1194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria meningitidis MC58

43.331

100

0.44
  recB Neisseria gonorrhoeae strain FA1090

42.985

100

0.435
  recB Neisseria gonorrhoeae MS11

42.985

100

0.435

Multiple sequence alignment