Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AOLE_RS18285 Genome accession   NC_014259
Coordinates   3886250..3887665 (+) Length   471 a.a.
NCBI ID   WP_013199132.1    Uniprot ID   A0AAN0PBU9
Organism   Acinetobacter oleivorans DR1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3881250..3892665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOLE_RS18265 (AOLE_18215) thrC 3881506..3882645 (+) 1140 WP_004795157.1 threonine synthase -
  AOLE_RS18270 (AOLE_18220) pbpG 3882753..3883799 (-) 1047 WP_128825344.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  AOLE_RS18275 (AOLE_18225) - 3884012..3884647 (+) 636 WP_003654436.1 response regulator -
  AOLE_RS18280 (AOLE_18230) pilS 3884658..3886226 (+) 1569 WP_013199131.1 PAS domain-containing sensor histidine kinase Regulator
  AOLE_RS18285 (AOLE_18235) pilR 3886250..3887665 (+) 1416 WP_013199132.1 sigma-54 dependent transcriptional regulator Regulator
  AOLE_RS18290 (AOLE_18240) - 3887668..3888852 (-) 1185 WP_013199133.1 S41 family peptidase -
  AOLE_RS18295 (AOLE_18245) gpmI 3888868..3890415 (-) 1548 WP_013199134.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  AOLE_RS18300 (AOLE_18250) lptG 3890542..3891612 (-) 1071 WP_013199135.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 52888.97 Da        Isoelectric Point: 6.1582

>NTDB_id=37703 AOLE_RS18285 WP_013199132.1 3886250..3887665(+) (pilR) [Acinetobacter oleivorans DR1]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDIMLPPLRERGGDILL
LANHFIQKVCMEWEIPSKQLTTTGETYLLQQDFPGNVRELRNMIERAITLSDDEFIDLTHLAPLLRSSSNSQITTQPVSD
TSTAIAQTRPKLPLEGLERYLENIEKDLLLNALDMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTELGEEV

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=37703 AOLE_RS18285 WP_013199132.1 3886250..3887665(+) (pilR) [Acinetobacter oleivorans DR1]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTTACTCAGTTTCATTATGATGCTTGCT
TAACCGATTTAAACCTACCCGATGGTAGCGGTTTAGAATTGGTTAAACACGTTTCTCAAACTTACCCACACACACCAATT
GCAGTTTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCGTTAAAGGCAGGAGCTTTTGACTTTGTAAGTAAACC
TATTAACCAAATTCATTTAGATCAGTTATTAAAAAAAGCGCTAAATCAGCCAAAACCAGAGCATGAGTTTGGTGAAACAA
CTTTGGAAAATGACCTATTAATTGGTCGCTCTCCTCCAATACAAAACTTACGGACAGCTATTAAAAAAATAGCTCGCTCT
CAAGCTCCTGTGTTTGTTACAGGCGAGTCTGGTACAGGTAAAGAGGTTGTTGCTAATCTTATTCACCGCTTGAGTAATCG
CAGCGAAGGCCCGTTTATTGCGATTAACTGTGGAGCCATCCCAACCGAGCTCATGGAAAGTGAACTTTTTGGACATAAAA
AAGGCAGTTTCACTGGAGCGACCCAAGACAAACAAGGCCTTATTTTGTCGGCTCATGGCGGCAGTTTATTTTTAGATGAA
ATTGCTGAATTGCCATTAAACATGCAGGTTAAATTGCTTCGGGCAGTGCAAGAGAAAAAAATTCGTCCCGTAGGTTCAGA
TCAGGAAATTGATGTTGATTTTCGAGTAATCAGCGCCAGCCATCAAGATTTAGATTTGTTAGTCCGACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTGATGGATATCATGTTGCCGCCACTACGTGAGCGTGGTGGAGATATTTTGTTA
TTAGCCAATCATTTTATTCAAAAAGTTTGTATGGAGTGGGAAATTCCAAGCAAACAACTAACTACAACTGGTGAAACTTA
TTTATTGCAGCAAGATTTCCCAGGTAATGTTCGTGAATTAAGAAATATGATTGAACGAGCTATTACCTTAAGTGATGATG
AATTTATTGATTTAACACATCTAGCACCTCTTCTTAGAAGCAGTAGCAACTCTCAAATCACCACTCAACCAGTGAGTGAC
ACGTCAACTGCGATAGCTCAAACTCGGCCAAAATTACCACTGGAAGGTTTAGAACGCTACTTAGAAAATATTGAAAAAGA
TCTTCTATTGAACGCATTGGACATGACACATTGGAACCGAACATTAGCAGCTAAAAAGCTAGGAATGACCTTTCGTTCTT
TACGCTATCGACTGAAAAAGTTTGGCTTAGATACCGAATTGGGAGAAGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

86.258

100

0.866
  pilR Pseudomonas aeruginosa PAK

51.204

97.028

0.497

Multiple sequence alignment