Detailed information    

insolico Bioinformatically predicted

Overview


Name   hns   Type   Regulator
Locus tag   AOLE_RS18125 Genome accession   NC_014259
Coordinates   3853726..3854052 (-) Length   108 a.a.
NCBI ID   WP_002053185.1    Uniprot ID   A0A0A7XV72
Organism   Acinetobacter oleivorans DR1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 3848726..3859052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOLE_RS18105 (AOLE_18050) - 3848829..3849458 (-) 630 WP_013199108.1 FHA domain-containing protein -
  AOLE_RS18110 (AOLE_18055) gspD 3849499..3851772 (-) 2274 WP_013199109.1 type II secretion system secretin GspD -
  AOLE_RS18115 (AOLE_18060) - 3851814..3852650 (-) 837 WP_013199110.1 type II secretion system protein N -
  AOLE_RS18120 (AOLE_18065) gspN 3852650..3853393 (-) 744 WP_005301710.1 type II secretion system protein N -
  AOLE_RS18125 (AOLE_18070) hns 3853726..3854052 (-) 327 WP_002053185.1 H-NS family nucleoid-associated regulatory protein Regulator
  AOLE_RS18130 (AOLE_18075) - 3854247..3854687 (-) 441 WP_023274336.1 thioesterase family protein -
  AOLE_RS18135 (AOLE_18080) - 3854695..3855888 (-) 1194 WP_005301703.1 hypothetical protein -
  AOLE_RS18140 (AOLE_18085) - 3855898..3856740 (-) 843 WP_013199112.1 hypothetical protein -
  AOLE_RS18145 (AOLE_18090) - 3856749..3857516 (-) 768 WP_013199113.1 uroporphyrinogen-III synthase -
  AOLE_RS18150 (AOLE_18095) hemC 3857520..3858437 (-) 918 WP_035332054.1 hydroxymethylbilane synthase -

Sequence


Protein


Download         Length: 108 a.a.        Molecular weight: 12478.12 Da        Isoelectric Point: 5.0524

>NTDB_id=37700 AOLE_RS18125 WP_002053185.1 3853726..3854052(-) (hns) [Acinetobacter oleivorans DR1]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=37700 AOLE_RS18125 WP_002053185.1 3853726..3854052(-) (hns) [Acinetobacter oleivorans DR1]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCGGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTTGAGCCACGTTACCGCAACAAAAACAATTCTGAA
GAGACTTGGACTGGTCGTGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains


Predicted by InterproScan.

(12-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0A7XV72

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991


Multiple sequence alignment