Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   HBA48_RS06830 Genome accession   NZ_CP050135
Coordinates   1317111..1319153 (-) Length   680 a.a.
NCBI ID   WP_003789825.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23331     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1312111..1324153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA48_RS06810 (HBA48_06845) dapC 1313210..1314388 (+) 1179 WP_003789831.1 succinyldiaminopimelate transaminase -
  HBA48_RS06815 (HBA48_06850) - 1314675..1315505 (+) 831 WP_206520648.1 DDE-type integrase/transposase/recombinase -
  HBA48_RS10785 - 1315535..1315738 (+) 204 WP_228368952.1 hypothetical protein -
  HBA48_RS06820 (HBA48_06855) - 1315849..1316286 (+) 438 WP_003789827.1 DMP19 family protein -
  HBA48_RS06825 (HBA48_06860) rdgB 1316338..1316934 (+) 597 WP_003789826.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  HBA48_RS06830 (HBA48_06865) recG 1317111..1319153 (-) 2043 WP_003789825.1 ATP-dependent DNA helicase RecG Machinery gene
  HBA48_RS06835 (HBA48_06870) ppk2 1319259..1320176 (-) 918 WP_003789824.1 polyphosphate kinase 2 -
  HBA48_RS06840 (HBA48_06875) rfbB 1320439..1321452 (-) 1014 WP_166503337.1 dTDP-glucose 4,6-dehydratase -
  HBA48_RS06845 (HBA48_06880) - 1321446..1322018 (-) 573 WP_038306735.1 aminodeoxychorismate/anthranilate synthase component II -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 75255.12 Da        Isoelectric Point: 8.1169

>NTDB_id=376994 HBA48_RS06830 WP_003789825.1 1317111..1319153(-) (recG) [Kingella kingae strain ATCC 23331]
MQADIRQKLKLTDNAATKLAKLHLHTAWDLALHLPLRYEDETQVVPIAAAPIGESCQVEGVVLHQEVQFKPRKQLIAQIQ
DESGSVLNLRFIHFYPNHQKQLAQGQTVRALGEIKRGYYGDEMIHPKIKSPEKSDLAQSLTPIYPTTNGLNQPTLRKVVQ
TALETVDLSEILPDNYLKKYQLIPLAQSLRTLHNPPPDWSLSMLTNGALPEWRRLKFDELLAQQLSMRLARQRRRAGNAR
ALVSTGKLSEKLLSYLPFDLTNAQKKVCAEIREDLAKPVPMHRLLQGDVGSGKTIVAALSALVALESDGVQVAIMAPTEI
LAEQHFIKFKQWFEPLGISVAWLSGSLKKKEKDQAKAALADGRIRVAVGTHALFQDDVLFHDLALVIVDEQHRFGVAQRL
ALKNKGSDVHQLMMSATPIPRTLAMSFFADLDVSSIDELPPNRTPIKTKLVNNLRRSEVEGFVLNTCQKGQQAYWVCPLI
EESEVLQLQTATDTLAELQAALPQLKIGLVHGRMKAAEKAAVMAEFISGSLNVLVATTVIEVGVDVPNASLMVIEHAERM
GLAQLHQLRGRVGRGAAASTCVLLFAEPLGQISKARLKVIYENTDGFEIARQDLEIRGPGEFLGARQSGAPMLRFADLQE
DLLLLEAAREVAADLVAHRPDVVAKHLERWLGSREGFLAA

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=376994 HBA48_RS06830 WP_003789825.1 1317111..1319153(-) (recG) [Kingella kingae strain ATCC 23331]
ATGCAAGCCGACATCCGCCAAAAACTCAAATTAACCGACAACGCCGCCACCAAGCTCGCCAAACTGCATTTGCATACCGC
GTGGGATTTGGCGTTGCATTTGCCCTTGCGCTACGAAGACGAAACCCAAGTTGTGCCGATTGCCGCCGCGCCCATTGGCG
AATCGTGCCAAGTGGAAGGCGTTGTTTTGCATCAAGAAGTGCAGTTCAAACCGCGCAAACAGCTCATCGCCCAAATTCAA
GACGAATCGGGTTCGGTGCTGAATTTGCGTTTTATCCATTTTTACCCCAATCATCAAAAACAATTGGCGCAGGGGCAAAC
GGTTCGGGCGTTGGGCGAAATCAAGCGCGGTTATTATGGCGATGAAATGATACACCCAAAAATTAAATCGCCCGAAAAAT
CCGATTTAGCACAATCACTTACGCCTATTTACCCAACCACAAACGGGCTAAATCAACCCACATTGCGAAAAGTGGTGCAA
ACCGCTTTGGAAACGGTGGATTTATCAGAAATTTTGCCCGATAACTATTTGAAAAAATACCAACTTATTCCGTTGGCGCA
AAGTTTGCGGACGTTGCACAATCCGCCGCCCGATTGGTCTTTGAGTATGCTGACCAATGGTGCGCTGCCTGAATGGCGAC
GTTTGAAATTTGATGAATTGTTGGCGCAACAGCTTTCCATGCGATTGGCGCGACAACGGCGACGTGCTGGCAATGCGCGA
GCATTGGTATCAACTGGAAAATTATCCGAAAAATTATTGAGTTATCTGCCATTTGATTTGACCAATGCGCAGAAAAAAGT
CTGTGCCGAAATCCGCGAAGATTTGGCAAAACCTGTGCCGATGCACCGTTTGTTGCAGGGCGATGTAGGCAGTGGCAAAA
CGATTGTGGCGGCGTTGTCGGCTTTGGTGGCGTTGGAGTCAGACGGCGTTCAGGTGGCGATTATGGCACCGACTGAAATT
TTGGCAGAACAACATTTTATTAAATTTAAACAATGGTTTGAGCCGTTAGGAATCAGCGTTGCGTGGCTTTCAGGCAGCCT
GAAAAAGAAAGAAAAAGACCAAGCCAAAGCTGCATTGGCGGACGGACGCATTCGCGTGGCGGTCGGGACACACGCTTTAT
TCCAAGATGATGTTTTATTTCATGATTTGGCGTTGGTGATTGTTGATGAACAGCACCGTTTTGGGGTGGCGCAGCGTTTG
GCATTGAAAAATAAGGGCAGCGATGTGCATCAGTTGATGATGTCGGCGACCCCGATTCCGCGCACTTTGGCGATGAGTTT
TTTTGCGGATTTGGACGTGTCGTCTATTGACGAATTGCCACCCAATCGTACACCCATTAAAACCAAATTAGTCAATAACT
TACGCCGTTCCGAAGTGGAAGGTTTTGTGTTGAACACTTGTCAAAAAGGGCAGCAGGCGTATTGGGTTTGCCCGCTTATT
GAAGAAAGCGAAGTTTTGCAGCTACAAACCGCAACCGACACGCTGGCGGAATTGCAGGCTGCTTTGCCGCAACTCAAAAT
TGGTTTGGTGCATGGGCGCATGAAAGCGGCGGAAAAAGCGGCGGTTATGGCGGAATTTATTTCAGGCAGCCTGAATGTTT
TGGTGGCGACAACCGTGATTGAAGTTGGCGTGGACGTGCCAAATGCGAGTTTGATGGTCATTGAACATGCGGAACGCATG
GGTTTGGCGCAGTTGCATCAGTTGCGCGGACGGGTAGGGCGTGGTGCGGCGGCGAGTACTTGCGTTTTGCTGTTTGCTGA
ACCGCTTGGACAGATTAGCAAAGCGCGTTTGAAAGTGATTTACGAGAACACAGACGGTTTTGAAATTGCGCGACAAGATT
TAGAAATTCGCGGGCCGGGCGAATTTTTGGGCGCGAGACAAAGCGGTGCGCCGATGTTGCGGTTTGCGGATTTGCAAGAA
GATTTGCTGTTGTTGGAAGCGGCACGAGAAGTGGCGGCGGATTTGGTGGCGCATCGCCCTGATGTGGTGGCGAAACATTT
AGAGCGGTGGTTGGGCAGCCGTGAAGGGTTTTTGGCGGCGTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(264-419)

RecG wedge domain (RecG_wedge)

(13-166)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(604-664)

Helicase conserved C-terminal domain (Helicase_C)

(467-575)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

73.785

99.853

0.737
  recG/mmsA Streptococcus pneumoniae R6

40.148

99.265

0.399
  recG/mmsA Streptococcus pneumoniae R36A

40.148

99.265

0.399
  recG Bacillus subtilis subsp. subtilis str. 168

40.895

95.294

0.39

Multiple sequence alignment