Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   HBA48_RS03970 Genome accession   NZ_CP050135
Coordinates   757114..758835 (-) Length   573 a.a.
NCBI ID   WP_166503210.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23331     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 752114..763835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA48_RS03965 (HBA48_03985) purM 755928..756965 (-) 1038 WP_003790695.1 phosphoribosylformylglycinamidine cyclo-ligase -
  HBA48_RS03970 (HBA48_03990) recD 757114..758835 (-) 1722 WP_166503210.1 exodeoxyribonuclease V subunit alpha Machinery gene
  HBA48_RS03975 (HBA48_03995) - 758832..759629 (-) 798 WP_038319971.1 polyamine aminopropyltransferase -
  HBA48_RS03980 (HBA48_04000) - 759768..760550 (-) 783 WP_038319972.1 NUDIX domain-containing protein -
  HBA48_RS03985 (HBA48_04005) - 760636..761532 (+) 897 WP_032134104.1 recombination-associated protein RdgC -
  HBA48_RS03990 (HBA48_04010) - 761619..762011 (+) 393 WP_032134103.1 hypothetical protein -
  HBA48_RS03995 (HBA48_04015) dcd 762021..762587 (+) 567 WP_003790685.1 dCTP deaminase -
  HBA48_RS04000 (HBA48_04020) recR 762691..763314 (+) 624 WP_003790684.1 recombination mediator RecR Machinery gene
  HBA48_RS04005 (HBA48_04025) - 763311..763745 (+) 435 WP_003790682.1 hypothetical protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 62533.72 Da        Isoelectric Point: 6.4990

>NTDB_id=376980 HBA48_RS03970 WP_166503210.1 757114..758835(-) (recD) [Kingella kingae strain ATCC 23331]
MNPQDTHTETELDLSPAAQAVCELFARIAPDVADSVAPFVQRLFAASANGDTFVYVSHSDVALLQQAAPLVGNDDRSPLV
LDGKRLFLAKSWHLERELAAQIQRLSQQECRLPAPDIITPKLQTWFADAGSHDQQAACTLALIKPFVLISGGPGTGKTTT
VAKLLALLCDEAALPRIALVAPTGKAAARLSQALRGALSRMTDLSPAIAAHLNALDGQTAHRLLGIKPPTLNAEYDSNNP
LVLDMVLIDEASMLDNYLFYQLLCALSDTCRVVLLGDADQLPSVGAGAILTALSTQSQVQAATLAQLQRYLPARSDWRTV
AEQFARLTLSHRFDSQSGIGQFAAAVRTGSLHHRDDVAQLFTQFPQALSQQHGSAKQLAEQMWQQHHDYWQAIDAGDVQA
AFAWQNRLIALTALSFDAQQINQAYRQIAQQHQRVSSSDTWFAGQMLLITRNAPAQKLYNGDVGIVMQPAQSKGLVACFP
DENVGYRTVPLSRLPEHESAFAMTVHKSQGSEYDSVWYFAPSHSTASRALLYTAVTRAKQQFVYWGDLDSAVQASQHHVP
RQTGLANFLQADR

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=376980 HBA48_RS03970 WP_166503210.1 757114..758835(-) (recD) [Kingella kingae strain ATCC 23331]
ATGAATCCGCAAGATACCCACACCGAAACCGAATTAGACCTGTCGCCAGCCGCGCAAGCCGTGTGTGAACTGTTTGCACG
CATTGCGCCCGATGTTGCCGACAGCGTTGCGCCGTTTGTGCAACGATTGTTTGCCGCCAGCGCAAATGGCGATACGTTTG
TTTACGTTAGCCACAGCGATGTCGCTCTATTGCAGCAAGCCGCGCCATTGGTGGGCAATGATGACCGCAGTCCGCTGGTG
TTGGACGGCAAACGCTTGTTTTTGGCAAAATCGTGGCATTTGGAACGCGAACTTGCCGCGCAAATCCAACGCCTATCGCA
ACAAGAATGCAGGCTGCCTGCGCCCGATATCATCACGCCTAAATTGCAAACGTGGTTTGCCGATGCAGGCAGCCACGACC
AGCAAGCAGCCTGCACTTTGGCGTTGATTAAACCATTTGTGTTGATTAGCGGTGGGCCGGGCACAGGCAAAACCACCACC
GTTGCCAAATTGCTGGCTTTGCTGTGCGATGAAGCCGCCTTACCGCGCATTGCATTGGTTGCGCCCACAGGCAAAGCCGC
AGCACGTTTATCACAAGCCCTGCGTGGCGCATTGTCGCGCATGACCGATTTATCGCCAGCCATTGCCGCGCATTTGAATG
CTTTGGACGGACAAACCGCGCACCGTTTATTGGGGATTAAACCGCCCACGCTGAACGCAGAATACGACAGCAACAACCCA
CTTGTGTTGGATATGGTGTTGATTGACGAAGCGTCTATGTTGGATAACTATTTGTTTTATCAGTTGCTTTGTGCTTTGTC
CGATACTTGCCGCGTGGTGTTGCTGGGCGATGCCGACCAACTGCCATCGGTGGGTGCAGGTGCGATTTTGACCGCGCTGT
CCACGCAATCACAAGTGCAGGCTGCTACGTTGGCGCAACTGCAACGCTACTTGCCCGCACGCAGCGATTGGCGCACCGTT
GCCGAACAATTCGCGCGTTTAACATTAAGCCATCGTTTTGATAGCCAAAGCGGCATTGGACAATTTGCCGCCGCCGTTCG
CACAGGCAGCCTGCACCATCGTGATGACGTAGCGCAACTGTTTACCCAGTTTCCGCAAGCCTTGTCGCAGCAACACGGTT
CAGCTAAACAACTTGCCGAGCAAATGTGGCAACAACATCACGACTATTGGCAAGCGATAGACGCTGGCGATGTGCAGGCT
GCTTTTGCGTGGCAAAACCGCTTAATCGCGCTAACGGCGTTGAGTTTTGACGCGCAACAAATCAACCAAGCCTATCGCCA
AATCGCGCAACAACATCAGCGCGTATCCAGCAGCGACACTTGGTTTGCAGGACAAATGTTGTTGATTACACGCAACGCGC
CTGCCCAAAAACTGTATAACGGTGATGTCGGTATTGTCATGCAGCCTGCACAATCCAAAGGCTTGGTTGCGTGTTTTCCC
GATGAAAACGTAGGCTACCGCACCGTGCCATTGAGCCGTTTGCCCGAACACGAATCCGCCTTTGCGATGACGGTTCACAA
AAGTCAAGGCTCGGAATACGACAGCGTGTGGTATTTTGCGCCGAGTCACAGCACCGCCAGTCGCGCCTTGCTCTACACCG
CCGTAACCCGAGCCAAACAACAATTTGTGTATTGGGGCGATTTAGATAGCGCGGTTCAAGCCAGCCAACACCATGTGCCA
CGCCAAACAGGATTGGCGAATTTTTTGCAGGCAGATAGGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(131-325)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(500-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae MS11

41.071

97.731

0.401
  recD Neisseria gonorrhoeae strain FA1090

40.893

97.731

0.4