Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HBA48_RS04000 Genome accession   NZ_CP050135
Coordinates   762691..763314 (+) Length   207 a.a.
NCBI ID   WP_003790684.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23331     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 757691..768314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA48_RS03975 (HBA48_03995) - 758832..759629 (-) 798 WP_038319971.1 polyamine aminopropyltransferase -
  HBA48_RS03980 (HBA48_04000) - 759768..760550 (-) 783 WP_038319972.1 NUDIX domain-containing protein -
  HBA48_RS03985 (HBA48_04005) - 760636..761532 (+) 897 WP_032134104.1 recombination-associated protein RdgC -
  HBA48_RS03990 (HBA48_04010) - 761619..762011 (+) 393 WP_032134103.1 hypothetical protein -
  HBA48_RS03995 (HBA48_04015) dcd 762021..762587 (+) 567 WP_003790685.1 dCTP deaminase -
  HBA48_RS04000 (HBA48_04020) recR 762691..763314 (+) 624 WP_003790684.1 recombination mediator RecR Machinery gene
  HBA48_RS04005 (HBA48_04025) - 763311..763745 (+) 435 WP_003790682.1 hypothetical protein -
  HBA48_RS10730 - 763800..763952 (+) 153 WP_223877606.1 hypothetical protein -
  HBA48_RS04010 (HBA48_04030) - 764024..764218 (+) 195 WP_003790680.1 hypothetical protein -
  HBA48_RS04015 (HBA48_04035) - 764373..764822 (+) 450 WP_003790679.1 GatB/YqeY domain-containing protein -
  HBA48_RS04020 (HBA48_04040) cmk 764833..765489 (+) 657 WP_003786432.1 (d)CMP kinase -
  HBA48_RS04025 (HBA48_04045) rpsA 765545..767290 (+) 1746 WP_072141382.1 30S ribosomal protein S1 -
  HBA48_RS04030 (HBA48_04050) - 767307..767612 (+) 306 WP_003790675.1 integration host factor subunit beta -
  HBA48_RS04035 (HBA48_04055) acpS 767697..768074 (-) 378 WP_003790673.1 holo-ACP synthase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22826.11 Da        Isoelectric Point: 5.2093

>NTDB_id=376981 HBA48_RS04000 WP_003790684.1 762691..763314(+) (recR) [Kingella kingae strain ATCC 23331]
MSDPNQIDAYSNLIHALRVLPNVGVKTAQRMAFALLQQNRDGAAQLLSALDLALKQIHNCQLCNTFCQDDLCHTCADPRR
DSRRLMIVHMPADVSAMELARCHDGLYFVLMGQVSPTQDMDLSHIALDKLVARIAQHPVDEIIIATAFTAEGDATAYVLS
ELFANQPYKISRLARGMPLGSELEYVDAGTLAQAVYERQLLQNGESS

Nucleotide


Download         Length: 624 bp        

>NTDB_id=376981 HBA48_RS04000 WP_003790684.1 762691..763314(+) (recR) [Kingella kingae strain ATCC 23331]
ATGTCCGACCCCAATCAAATTGACGCTTATTCCAACCTAATCCATGCGCTGCGCGTGTTGCCCAATGTGGGCGTGAAAAC
CGCACAGCGCATGGCGTTTGCCTTGCTGCAACAAAACCGAGATGGTGCAGCACAACTCTTGTCTGCGCTGGATTTGGCGT
TAAAGCAAATCCACAACTGCCAGCTATGCAACACGTTTTGCCAAGACGATTTGTGCCACACTTGCGCCGATCCGCGCCGA
GATTCGCGCCGTTTGATGATTGTGCATATGCCTGCCGATGTGTCGGCAATGGAATTGGCACGTTGTCATGACGGCTTGTA
TTTTGTGTTGATGGGACAAGTCAGCCCCACGCAAGACATGGATTTGAGCCACATTGCGCTAGACAAATTGGTCGCGCGAA
TCGCCCAACATCCTGTGGACGAAATCATCATCGCCACCGCATTCACAGCCGAGGGCGATGCCACGGCGTATGTTTTATCG
GAATTGTTTGCCAATCAACCATATAAAATCAGTCGTTTAGCGCGTGGTATGCCACTGGGCAGCGAGCTGGAATATGTGGA
CGCTGGCACGTTGGCGCAGGCGGTATATGAACGCCAGTTGCTGCAAAACGGAGAGTCGTCATGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(43-81)

Toprim domain (Toprim_4)

(84-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.104

92.754

0.372