Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   HBA50_RS08340 Genome accession   NZ_CP050133
Coordinates   1667096..1669111 (-) Length   671 a.a.
NCBI ID   WP_045498578.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1662096..1674111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS08320 (HBA50_08320) - 1662374..1663768 (-) 1395 WP_045496874.1 IS1182 family transposase -
  HBA50_RS08325 (HBA50_08325) - 1663889..1664443 (-) 555 WP_045498586.1 GNAT family protein -
  HBA50_RS08330 (HBA50_08330) nadE 1664491..1665315 (-) 825 WP_045498584.1 ammonia-dependent NAD(+) synthetase -
  HBA50_RS08335 (HBA50_08335) - 1665312..1666772 (-) 1461 WP_045498581.1 nicotinate phosphoribosyltransferase -
  HBA50_RS08340 (HBA50_08340) recG/mmsA 1667096..1669111 (-) 2016 WP_045498578.1 ATP-dependent DNA helicase RecG Machinery gene
  HBA50_RS08345 (HBA50_08345) alr 1669143..1670249 (-) 1107 WP_045498575.1 alanine racemase -
  HBA50_RS08350 (HBA50_08350) acpS 1670239..1670601 (-) 363 WP_045498572.1 holo-ACP synthase -
  HBA50_RS08355 (HBA50_08355) - 1670800..1671837 (-) 1038 WP_045498569.1 3-deoxy-7-phosphoheptulonate synthase -
  HBA50_RS08360 (HBA50_08360) - 1671839..1672870 (-) 1032 WP_045498564.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75230.81 Da        Isoelectric Point: 6.2242

>NTDB_id=376941 HBA50_RS08340 WP_045498578.1 1667096..1669111(-) (recG/mmsA) [Streptococcus cristatus ATCC 51100]
MNLHQALTALPGVGPKSAEKFKKLGLESLQDLLLYFPFRYEDFKSKNVLDLEDGEKAVISGIVATPANVQYYGYKRNRLR
FTIKQGEVAIAVNFFNQPYLADKIELGATVAIFGKWDKAKASLTGMKVLAQVEDDLQPVYRVAQGISQASLVKLIKAAFD
QGLDQLLEENLPPVLLERYQLLGRTQAVRAMHFPRDLAEYKQALRRVKFEELFYFQMQLQVLKHENKDISQGLAIPWQEK
MLAQKKAALPFSLTEAQERSLEEILSDLQSPAHMNRLLQGDVGSGKTVVAGLAMYAAYTAGYQSALMVPTEILAEQHLDS
LTQLFPELNLALLTGGMKAAERRETLAAIESGQVDMVVGTHALIQEGVVYHRLGLVIIDEQHRFGVDQRRILREKGNNPD
VLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWMKKELAKGAQVYFISPLIEESEALDLKN
AIALEEELKAYFANQAQVALLHGRMKNDEKEAIMQDFKDGKTDILVSTTVIEVGVNVPNATIMVIMDADRFGLSQLHQLR
GRVGRGNKQSYAVLVANPKTESGKKRMKIMTETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK
VASQIVANPSWRQDANWHLVSLHLEKRDYLD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=376941 HBA50_RS08340 WP_045498578.1 1667096..1669111(-) (recG/mmsA) [Streptococcus cristatus ATCC 51100]
ATGAATCTGCACCAGGCTTTGACGGCTCTGCCAGGAGTGGGGCCAAAATCGGCTGAAAAATTTAAAAAACTAGGCCTTGA
GAGCCTGCAGGATCTCCTGCTCTATTTTCCTTTTCGCTATGAAGATTTTAAGAGTAAGAATGTCCTTGATTTAGAAGATG
GAGAAAAGGCGGTCATTTCTGGGATCGTCGCGACTCCAGCTAATGTTCAGTATTATGGCTACAAGCGCAATCGCCTGCGT
TTCACAATCAAGCAGGGAGAAGTCGCGATTGCAGTCAACTTTTTCAACCAGCCGTATCTAGCAGATAAGATCGAGCTGGG
AGCAACGGTGGCTATTTTTGGTAAATGGGATAAAGCCAAGGCTAGTCTGACGGGGATGAAGGTGTTAGCTCAGGTTGAAG
ACGACTTGCAGCCAGTTTATCGAGTTGCCCAAGGGATTAGTCAGGCCAGTCTTGTCAAACTGATTAAGGCAGCCTTTGAC
CAAGGTTTGGATCAGTTGTTAGAGGAGAATCTTCCTCCTGTCCTTCTGGAGCGCTACCAGCTTTTGGGGCGCACTCAAGC
TGTGCGTGCCATGCACTTTCCTAGGGATTTGGCGGAATATAAGCAGGCCCTGCGTCGGGTCAAGTTTGAAGAACTTTTTT
ATTTTCAGATGCAGCTGCAGGTTCTGAAGCATGAGAACAAGGATATCAGTCAGGGACTCGCTATTCCTTGGCAGGAAAAA
ATGCTGGCTCAAAAAAAAGCTGCATTGCCATTTTCTCTGACGGAAGCTCAGGAGAGGAGTCTGGAAGAAATTCTCAGTGA
TTTGCAATCGCCTGCTCATATGAACCGTCTCCTGCAAGGAGATGTTGGTAGTGGTAAGACTGTTGTGGCCGGTTTGGCCA
TGTATGCCGCCTATACGGCAGGCTATCAGTCAGCTTTGATGGTTCCGACAGAAATCTTGGCTGAGCAGCATCTGGATAGC
CTGACTCAGCTCTTTCCTGAACTGAATTTAGCCCTCCTAACTGGTGGTATGAAAGCCGCTGAACGCAGAGAGACTTTAGC
TGCCATAGAGTCGGGGCAAGTAGATATGGTGGTCGGCACCCATGCCTTGATTCAGGAAGGGGTGGTCTATCATCGACTTG
GCTTGGTCATTATTGATGAGCAACATCGTTTTGGGGTGGACCAGCGTCGGATTTTGCGGGAAAAGGGAAATAATCCAGAC
GTTCTCATGATGACAGCCACGCCTATTCCTCGTACTTTGGCCATTACCGCTTTTGGTGACATGGATGTCTCTATCATCGA
CCAGATGCCGGCTGGCCGCAAGCCTATCATTACTCGCTGGGTCAAGCACGAGCAATTGGAAGTGGTTTTGGACTGGATGA
AAAAAGAGCTGGCCAAGGGTGCCCAAGTCTACTTCATTTCTCCCTTGATTGAGGAATCGGAGGCTTTGGATTTAAAAAAT
GCGATTGCTCTAGAGGAAGAGCTCAAGGCCTACTTTGCCAATCAGGCTCAGGTGGCTCTCCTTCACGGTCGTATGAAAAA
TGACGAAAAAGAGGCCATTATGCAGGACTTCAAGGATGGGAAAACAGATATTCTAGTGTCAACTACAGTTATTGAAGTCG
GCGTCAATGTTCCGAATGCGACCATCATGGTTATCATGGATGCTGACCGCTTCGGACTCAGCCAGCTTCATCAGCTGCGG
GGACGAGTGGGTCGAGGAAATAAGCAGTCTTATGCTGTGCTGGTTGCCAATCCCAAGACAGAGTCTGGCAAGAAACGTAT
GAAAATCATGACCGAGACAACAGATGGCTTTGTTCTGGCTGAGGAAGACCTCAAGATGCGTGGCTCTGGTGAAATTTTTG
GGACCCGTCAGTCTGGTATCCCAGAGTTTCAGGTGGCGGACATCGTGGAGGACTATCCCATTTTGGAAGAAGCGCGCAAG
GTCGCCAGCCAAATCGTCGCCAATCCTAGCTGGCGGCAGGATGCCAATTGGCACCTAGTATCCCTGCATCTTGAAAAACG
CGATTATCTGGACTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(455-567)

DEAD/DEAH box helicase (DEAD)

(254-411)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-660)

RecG wedge domain (RecG_wedge)

(12-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

78.241

100

0.782
  recG/mmsA Streptococcus pneumoniae R36A

78.241

100

0.782
  recG Bacillus subtilis subsp. subtilis str. 168

48.378

100

0.489
  recG Neisseria meningitidis strain C311

38.839

100

0.389