Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AOLE_RS01530 Genome accession   NC_014259
Coordinates   328926..329567 (+) Length   213 a.a.
NCBI ID   WP_013196695.1    Uniprot ID   A0AAN0P5G9
Organism   Acinetobacter oleivorans DR1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 323926..334567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOLE_RS01515 (AOLE_01465) - 324228..325049 (+) 822 WP_023274368.1 putative RNA methyltransferase -
  AOLE_RS01520 (AOLE_01470) ponA 325145..327706 (-) 2562 WP_013196693.1 penicillin-binding protein PBP1a -
  AOLE_RS01525 (AOLE_01475) comM 327868..328926 (+) 1059 WP_023274369.1 pilus assembly protein PilM Machinery gene
  AOLE_RS01530 (AOLE_01480) pilN 328926..329567 (+) 642 WP_013196695.1 PilN domain-containing protein Machinery gene
  AOLE_RS01535 (AOLE_01485) pilO 329564..330313 (+) 750 WP_013196696.1 type 4a pilus biogenesis protein PilO Machinery gene
  AOLE_RS01540 (AOLE_01490) pilP 330324..330851 (+) 528 WP_013196697.1 pilus assembly protein PilP Machinery gene
  AOLE_RS01545 (AOLE_01495) pilQ 330914..333079 (+) 2166 WP_013196698.1 type IV pilus secretin PilQ family protein Machinery gene
  AOLE_RS01550 (AOLE_01500) aroK 333091..333660 (+) 570 WP_004789808.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23858.17 Da        Isoelectric Point: 5.4112

>NTDB_id=37670 AOLE_RS01530 WP_013196695.1 328926..329567(+) (pilN) [Acinetobacter oleivorans DR1]
MATINLLPWRDGLREQRKKQFIIFCFGVVVLGITTVSSGWFYLNQKLDDQEQANQLITSTNQSLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEEKKDKTASSLLPRVEDSYGSFVVTVDLGEMGVTTTDDTANTSVSADKGAVK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=37670 AOLE_RS01530 WP_013196695.1 328926..329567(+) (pilN) [Acinetobacter oleivorans DR1]
ATGGCAACAATTAATTTACTTCCTTGGCGTGATGGGCTTAGGGAACAACGCAAAAAACAATTTATTATTTTCTGTTTTGG
GGTCGTTGTGCTGGGGATTACCACTGTATCTTCTGGGTGGTTTTATTTAAATCAAAAATTAGATGATCAAGAACAAGCTA
ATCAACTCATAACCAGTACAAACCAGAGTCTAGATCAACAGCTTAAAACCTTAAATGGCTTGCAAGAACAGCGTGATGCC
ATTATCGAACGTATGAAACTTATTCAGGGATTGCAAAGTCAACGTCCTGTTGTTGTGCGTTTGGTGGATGAATTGGTACG
GGTGACTCCGGCAGCGATGTATTTGACTAAATTTAGCAGAACTGGAGATAAGTTTACCATTGAAGGTAAAGCAGAAAGTC
CAAATACGGTCGCGGAGTTATTACGTAATCTCGAAGCATCACCATGGTATCGCAACGCTTTCATGAACTCTTTCTTGGCG
ACTGAAGAGAAAAAAGATAAGACGGCAAGTTCGCTGCTTCCTAGAGTAGAAGATAGTTATGGCAGTTTTGTTGTGACTGT
TGATTTAGGAGAAATGGGGGTGACTACAACAGATGATACCGCCAATACGTCTGTAAGTGCGGATAAGGGGGCGGTTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.732

100

0.887
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704

Multiple sequence alignment