Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AOLE_RS01545 Genome accession   NC_014259
Coordinates   330914..333079 (+) Length   721 a.a.
NCBI ID   WP_013196698.1    Uniprot ID   A0AAN0P5K6
Organism   Acinetobacter oleivorans DR1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 325914..338079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOLE_RS01525 (AOLE_01475) comM 327868..328926 (+) 1059 WP_023274369.1 pilus assembly protein PilM Machinery gene
  AOLE_RS01530 (AOLE_01480) pilN 328926..329567 (+) 642 WP_013196695.1 PilN domain-containing protein Machinery gene
  AOLE_RS01535 (AOLE_01485) pilO 329564..330313 (+) 750 WP_013196696.1 type 4a pilus biogenesis protein PilO Machinery gene
  AOLE_RS01540 (AOLE_01490) pilP 330324..330851 (+) 528 WP_013196697.1 pilus assembly protein PilP Machinery gene
  AOLE_RS01545 (AOLE_01495) pilQ 330914..333079 (+) 2166 WP_013196698.1 type IV pilus secretin PilQ family protein Machinery gene
  AOLE_RS01550 (AOLE_01500) aroK 333091..333660 (+) 570 WP_004789808.1 shikimate kinase AroK -
  AOLE_RS01555 (AOLE_01505) aroB 333689..334771 (+) 1083 WP_013196699.1 3-dehydroquinate synthase -
  AOLE_RS01560 (AOLE_01510) - 334788..335666 (+) 879 WP_005300981.1 hypothetical protein -

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 78004.40 Da        Isoelectric Point: 6.3947

>NTDB_id=37673 AOLE_RS01545 WP_013196698.1 330914..333079(+) (pilQ) [Acinetobacter oleivorans DR1]
MNHVFRQFSMGAVAIALMQVASAQVSMTNIVPTQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFNKAQQTLTQSKV
AIGTNEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSAQAAIKPLPTTTVQPQGVSNIGFQRGGQGEGLIV
IDLLGSNTPVDVQQQGSKVVVRTLGSKIPTHLAKRLNVNDFATPVSTIESYNEKGNGVITIQSTGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVTELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAQAQDIMGLITQGSNNGNGLQHTSGGGTSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGITNNNNLLVGGSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADG
YGEVISTPKVMTADKQPAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGKIQMKLDISKDSVAGAAPN
GELILNKNQINTNVLVNNGETVILGGVFEQTTTNSQTKVPFFGDIPVLGHLFRKDVKSDDKQELLIFVTPRIVNDTLVRN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=37673 AOLE_RS01545 WP_013196698.1 330914..333079(+) (pilQ) [Acinetobacter oleivorans DR1]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCCATTGCACTTATGCAGGTTGCCTCTGCACAGGTCAGCAT
GACCAATATTGTACCAACGCAAATTGCAGGTCAGGGTACAGAAATTCGAGTTATGTTTAATGGTTTGCCACCACAACCAC
AGGCATACCAACTTGAAAATCCTTCACGTTTGATTTTGGATTTTAATAAAGCTCAGCAGACTTTAACACAGTCAAAAGTA
GCAATTGGTACAAATGAAGCAAGCTCAGTTGATGTAAGTTCTGATGATCAGCGCTCACGTTTAACTGTAAATTTAAAAGA
GGCAGGTGCGTTTACAACGCGCATTGAAGGCAATACTTTTATTCTAAAGATTAATTCAGCTCAAGCAGCTATTAAGCCTT
TACCAACCACTACAGTACAGCCACAAGGTGTCTCAAATATTGGCTTTCAGCGCGGTGGTCAAGGTGAAGGATTAATTGTT
ATTGATTTATTGGGAAGTAATACCCCTGTTGATGTTCAGCAACAAGGTAGCAAAGTCGTAGTGAGAACTCTGGGCTCTAA
AATTCCCACACATTTAGCTAAACGTTTAAATGTGAATGATTTTGCAACTCCTGTTTCTACCATTGAATCTTATAACGAAA
AAGGCAATGGTGTTATTACGATCCAATCTACTGGTAGCTATGAATATATGGCTTATCAAGCGGAAAATAAACTCACCATT
AGCTTAAAGCGCCCTCAGGATAAAAACGTAACTTCTTTATATAAGACACCTAATTACTCTGGTAATAAGCTTTCTCTTGA
TTTCCAAGATATTGAAGTCCGTCGCGTTTTACAGTTACTTGCCGATTTTACTGGCATTAATATGGTGGCCGCCGATAGTG
TTCAGGGTAATATTACTTTGCGCTTGAAAGATGTTCCGTGGGATCAGGCACTTGATATTATTTTAAAGACCAAAAATCTT
GATAAACGTAGAAATGGTAATGTTATTTGGATTGCTCCTGTTACTGAATTGATTAAGGCTGAAGAAGAAGAAGCAAAAGC
TGTCGCTCAGAGTGTCAAACTCGCTCCTTTGCAAACTGAGTATATTCAACTTAAATATGCTCAAGCACAGGATATTATGG
GTTTAATTACTCAAGGTTCAAATAATGGCAATGGTTTGCAGCATACTTCAGGTGGAGGTACTTCAACTTCTACTAACTTA
AATACGGGTGTTGATAGTTTAGGAAATAACGTAGGAAGTTTATTGAGTCCACGTGGAACAATTACTCAAGATGATCGTAC
CAATACTTTAATTATTAACGATACAGCTCAGTCGATTGATCAAATTCGTAAAATGATTGATTTACTAGATGTGCAAGTTA
AGCAGGTCATGGTTGAGGCACGTATTGTTAGAGCTTCTACTTCTTTTACCAAAGAGCTTGGTGTTAAGTGGGGGATCCTA
TCTCAAGGAATTACCAATAATAATAACTTGCTGGTTGGTGGTAGTGAAACAACTTTATGGAATTTACGAGAACCCAAAAA
AGATGAGACTACGGGAGGATATAAATACACGATTGAACGTCCAGATAATTTAAACGTCGATTTAGGGGTGACCAATCCGG
CTGGAAGTATTGCCTTTGGTTTGATTAGCATGTCTGATTTTATGCTTGATCTTGAACTTTCAGCATTACAAGCCGATGGC
TATGGTGAGGTTATTTCTACACCTAAAGTCATGACAGCAGATAAACAACCAGCGAAAGTTGCGACAGGTCAGCAGGTCCC
TTATCAATCTACAACGAACTCTGCTGCAGGCTCAACTGCCACAACTTCATTTAAAGATGCGCTGTTAAGCTTAAACGTGA
CACCAAGTATTACACCTGACGGGAAGATCCAAATGAAATTAGATATTTCGAAAGATTCCGTTGCTGGTGCTGCTCCTAAT
GGCGAGTTAATTTTAAATAAAAATCAGATTAACACTAATGTATTGGTTAATAACGGTGAAACAGTCATTTTAGGTGGGGT
GTTTGAGCAGACGACAACTAACTCACAAACCAAGGTTCCTTTCTTTGGTGATATTCCTGTACTTGGGCATTTATTCAGAA
AAGATGTGAAATCTGATGATAAACAAGAGTTACTGATTTTCGTTACTCCACGAATTGTTAATGACACTTTGGTGAGAAAT
CATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(39-118)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)

Bacterial type II and III secretion system protein (Secretin)

(555-713)

Secretin and TonB N terminus short domain (STN)

(291-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

93.759

100

0.938
  pilQ Acinetobacter baumannii strain A118

93.62

100

0.936
  comQ Acinetobacter baylyi ADP1

74.965

100

0.752
  pilQ Pseudomonas aeruginosa PAK

38.032

100

0.397

Multiple sequence alignment