Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HMPREF4655_RS03225 Genome accession   NC_017360
Coordinates   642841..644016 (-) Length   391 a.a.
NCBI ID   WP_000060237.1    Uniprot ID   -
Organism   Helicobacter pylori 35A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 637841..649016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF4655_RS03190 (HMPREF4655_20659) - 638158..638472 (+) 315 WP_000867999.1 hypothetical protein -
  HMPREF4655_RS03195 (HMPREF4655_20660) - 638450..639226 (+) 777 WP_000602379.1 RNA polymerase sigma factor FliA -
  HMPREF4655_RS03200 (HMPREF4655_20661) fliM 639219..640283 (+) 1065 WP_000763606.1 flagellar motor switch protein FliM -
  HMPREF4655_RS03205 (HMPREF4655_20662) fliY 640287..641150 (+) 864 WP_001150692.1 flagellar motor switch protein FliY -
  HMPREF4655_RS03210 (HMPREF4655_20663) - 641179..641715 (+) 537 WP_000964002.1 YhcH/YjgK/YiaL family protein -
  HMPREF4655_RS03215 (HMPREF4655_20664) - 641712..642209 (+) 498 WP_000780273.1 DUF2147 domain-containing protein -
  HMPREF4655_RS03220 (HMPREF4655_20665) fur 642229..642681 (-) 453 WP_000825002.1 ferric iron uptake transcriptional regulator -
  HMPREF4655_RS03225 (HMPREF4655_20666) rarA 642841..644016 (-) 1176 WP_000060237.1 replication-associated recombination protein A Machinery gene
  HMPREF4655_RS03230 (HMPREF4655_20667) - 644013..644384 (-) 372 WP_000332994.1 heat shock protein transcriptional repressor HspR -
  HMPREF4655_RS03235 (HMPREF4655_20668) - 644394..645260 (-) 867 WP_000045797.1 DnaJ family protein -
  HMPREF4655_RS03240 (HMPREF4655_20669) - 645428..646678 (+) 1251 WP_001199615.1 hypothetical protein -
  HMPREF4655_RS03245 (HMPREF4655_20670) - 646700..647566 (-) 867 WP_080005303.1 5'-3' exonuclease -
  HMPREF4655_RS03250 (HMPREF4655_20671) - 647797..648693 (-) 897 WP_000697547.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43936.52 Da        Isoelectric Point: 7.2325

>NTDB_id=37673 HMPREF4655_RS03225 WP_000060237.1 642841..644016(-) (rarA) [Helicobacter pylori 35A]
MSLTSLLNPKSLEDFLGQEHLIGKDTPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALILLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQEGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=37673 HMPREF4655_RS03225 WP_000060237.1 642841..644016(-) (rarA) [Helicobacter pylori 35A]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACACCCC
CTTATTTAAAGCCCTACAATCAAAACACTTCCCTCATGCTTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCCAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAATATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGTGATGATACGCATTATAATCTTACTAGCGCTTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAATCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAGAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391

Multiple sequence alignment