Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FQ488_RS00040 Genome accession   NZ_CP042289
Coordinates   9432..9944 (+) Length   170 a.a.
NCBI ID   WP_010720497.1    Uniprot ID   A0A1V8XB86
Organism   Enterococcus hirae strain HDC14-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4432..14944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQ488_RS00030 (FQ488_00030) gyrA 6184..8682 (+) 2499 WP_185184822.1 DNA gyrase subunit A -
  FQ488_RS00035 (FQ488_00035) rpsF 9081..9380 (+) 300 WP_010720498.1 30S ribosomal protein S6 -
  FQ488_RS00040 (FQ488_00040) ssb 9432..9944 (+) 513 WP_010720497.1 single-stranded DNA-binding protein Machinery gene
  FQ488_RS00045 (FQ488_00045) rpsR 9970..10206 (+) 237 WP_002288370.1 30S ribosomal protein S18 -
  FQ488_RS00050 (FQ488_00050) - 10354..10761 (-) 408 WP_010736777.1 hypothetical protein -
  FQ488_RS00055 (FQ488_00055) - 11000..12973 (+) 1974 WP_034697669.1 DHH family phosphoesterase -
  FQ488_RS00060 (FQ488_00060) rplI 12979..13431 (+) 453 WP_010720494.1 50S ribosomal protein L9 -
  FQ488_RS00065 (FQ488_00065) - 13824..14315 (-) 492 WP_034867241.1 glycine zipper family protein -
  FQ488_RS15535 - 14364..14486 (-) 123 WP_014834375.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18703.22 Da        Isoelectric Point: 4.5567

>NTDB_id=376645 FQ488_RS00040 WP_010720497.1 9432..9944(+) (ssb) [Enterococcus hirae strain HDC14-2]
MINNVVLVGRLTKDPDLRYTSSGTAVATFTLAVNRNFTSQNGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQLLESRAASENRQQTGGYQSSGQSTNDFGGSNNYNQTSQSSNGMPDFDRDNSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=376645 FQ488_RS00040 WP_010720497.1 9432..9944(+) (ssb) [Enterococcus hirae strain HDC14-2]
TTGATTAATAATGTTGTACTAGTTGGACGTCTAACTAAAGATCCGGATTTACGATATACATCAAGTGGCACTGCAGTAGC
AACGTTTACTTTAGCTGTTAATCGTAATTTTACTAGCCAAAACGGCAATCGTGAGGCTGACTTTATTAATTGTGTGATTT
GGCGTAAATCAGCAGAGACATTAGCAAACTATGCTCGTAAGGGGACTCTTTTAGGAGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTAACAGAAGTAGTTGCTGAAAACTTCCAATTATTGGAAAGTCGTGC
TGCATCTGAAAATCGTCAACAAACTGGCGGTTACCAAAGCTCTGGTCAATCGACAAATGATTTTGGCGGAAGTAATAACT
ATAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTTGATCGTGACAATTCTGATCCATTTGGTTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V8XB86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.628

100

0.624
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.542

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376

Multiple sequence alignment