Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | HPB8_RS07500 | Genome accession | NC_014256 |
| Coordinates | 1554458..1554571 (-) | Length | 37 a.a. |
| NCBI ID | WP_001217873.1 | Uniprot ID | G2MCV1 |
| Organism | Helicobacter pylori B8 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1549458..1559571
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPB8_RS07480 (HPB8_1582) | - | 1550124..1551536 (-) | 1413 | WP_001861341.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HPB8_RS07485 (HPB8_1583) | comB10 | 1551606..1552742 (-) | 1137 | WP_001045869.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPB8_RS07490 (HPB8_1584) | comB9 | 1552735..1553718 (-) | 984 | WP_001861340.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPB8_RS07495 (HPB8_1585) | comB8 | 1553718..1554461 (-) | 744 | WP_000660520.1 | type IV secretion system protein | Machinery gene |
| HPB8_RS07500 (HPB8_1586) | comB7 | 1554458..1554571 (-) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| HPB8_RS07505 (HPB8_1587) | comB6 | 1554587..1555642 (-) | 1056 | WP_000786677.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPB8_RS07510 (HPB8_1588) | - | 1555650..1556645 (-) | 996 | WP_000468428.1 | PDZ domain-containing protein | - |
| HPB8_RS07515 (HPB8_1589) | - | 1556645..1556947 (-) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPB8_RS07520 (HPB8_1590) | panD | 1556950..1557303 (-) | 354 | WP_000142236.1 | aspartate 1-decarboxylase | - |
| HPB8_RS07525 (HPB8_1591) | - | 1557293..1559518 (-) | 2226 | WP_001051506.1 | AAA family ATPase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4325.25 Da Isoelectric Point: 9.3572
>NTDB_id=37663 HPB8_RS07500 WP_001217873.1 1554458..1554571(-) (comB7) [Helicobacter pylori B8]
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=37663 HPB8_RS07500 WP_001217873.1 1554458..1554571(-) (comB7) [Helicobacter pylori B8]
ATGAGAATTTTTTTTGTTATCATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGAATTTTTTTTGTTATCATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
100 |
100 |
1 |