Detailed information NTG0037661

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPB8_RS07490
• Genome accession: NC_014256
• Coordinates: 1552735..1553718 (-)
• Length: 327 a.a.
• NCBI ID: WP_001861340.1
• Uniprot ID: D7FG34
• Organism: Helicobacter pylori B8
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1547735..1558718

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPB8_RS07470 (HPB8_1580)	-	1548026..1548958 (-)	933	WP_001006014.1	GDP-L-fucose synthase family protein	-
HPB8_RS07475 (HPB8_1581)	gmd	1548951..1550096 (-)	1146	WP_000659801.1	GDP-mannose 4,6-dehydratase	-
HPB8_RS07480 (HPB8_1582)	-	1550124..1551536 (-)	1413	WP_001861341.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPB8_RS07485 (HPB8_1583)	comB10	1551606..1552742 (-)	1137	WP_001045869.1	DNA type IV secretion system protein ComB10	Machinery gene
HPB8_RS07490 (HPB8_1584)	comB9	1552735..1553718 (-)	984	WP_001861340.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPB8_RS07495 (HPB8_1585)	comB8	1553718..1554461 (-)	744	WP_000660520.1	type IV secretion system protein	Machinery gene
HPB8_RS07500 (HPB8_1586)	comB7	1554458..1554571 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPB8_RS07505 (HPB8_1587)	comB6	1554587..1555642 (-)	1056	WP_000786677.1	P-type conjugative transfer protein TrbL	Machinery gene
HPB8_RS07510 (HPB8_1588)	-	1555650..1556645 (-)	996	WP_000468428.1	PDZ domain-containing protein	-
HPB8_RS07515 (HPB8_1589)	-	1556645..1556947 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HPB8_RS07520 (HPB8_1590)	panD	1556950..1557303 (-)	354	WP_000142236.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37670.47 Da
• Isoelectric Point: 9.4540

>NTDB_id=37661 HPB8_RS07490 WP_001861340.1 1552735..1553718(-) (comB9) [Helicobacter pylori B8]
MRKFLYALMGFLLVFSVLKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENAFENAPTNNKPLKEEPLKAGKEEAKEKEEETIIIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLG
ICSKKSKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRF
VKKGKDE

Nucleotide

• Length: 984 bp

>NTDB_id=37661 HPB8_RS07490 WP_001861340.1 1552735..1553718(-) (comB9) [Helicobacter pylori B8]
ATGCGGAAATTTTTATACGCTCTCATGGGCTTTTTATTGGTTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCCAAAATGTCCAACACCTTGAACATTGATTACTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGTATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAAGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGACAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAATAAAGAAAATGCCTTTGAAAATGCCCCCACAAACAACAAGCCCTTAAA
AGAAGAACCCTTAAAAGCAGGAAAAGAAGAAGCCAAAGAAAAAGAAGAAGAGACTATAATTATTGGCGATAACACTAACG
CCATGAAAATCGTTAAAAAAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGGGG
ATTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGA
CAAAAAATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTAAATACTAGGATTG
TGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGCAAGGACTATTTGTGTATCCGTTTT
GTCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-318)

3D structure

• AlphaFold DB: D7FG34

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.749	100	0.939