Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   FQB22_RS21350 Genome accession   NZ_CP042252
Coordinates   4132123..4132416 (-) Length   97 a.a.
NCBI ID   WP_003183466.1    Uniprot ID   -
Organism   Bacillus licheniformis strain KNU11     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4127123..4137416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQB22_RS21305 tasA 4127505..4128299 (-) 795 WP_003183447.1 biofilm matrix protein TasA -
  FQB22_RS21310 sipW 4128373..4128957 (-) 585 WP_003183449.1 signal peptidase I SipW -
  FQB22_RS21315 tapA 4128954..4129682 (-) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  FQB22_RS21320 - 4129959..4130279 (+) 321 WP_003183454.1 YqzG/YhdC family protein -
  FQB22_RS21325 - 4130303..4130485 (-) 183 WP_003183456.1 YqzE family protein -
  FQB22_RS21330 comGG 4130574..4130939 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  FQB22_RS21335 comGF 4130952..4131440 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  FQB22_RS21340 comGE 4131349..4131696 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  FQB22_RS21345 comGD 4131680..4132117 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  FQB22_RS21350 comGC 4132123..4132416 (-) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  FQB22_RS21355 comGB 4132430..4133464 (-) 1035 WP_011198115.1 competence type IV pilus assembly protein ComGB Machinery gene
  FQB22_RS21360 comGA 4133454..4134518 (-) 1065 WP_003183477.1 competence type IV pilus ATPase ComGA Machinery gene
  FQB22_RS21365 - 4134675..4135514 (-) 840 WP_003183480.1 STAS domain-containing protein -
  FQB22_RS21375 - 4135756..4136133 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  FQB22_RS21380 - 4136342..4136587 (+) 246 WP_003183483.1 DUF2626 domain-containing protein -
  FQB22_RS21385 - 4136625..4137263 (-) 639 WP_003183485.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10725.62 Da        Isoelectric Point: 9.1200

>NTDB_id=376314 FQB22_RS21350 WP_003183466.1 4132123..4132416(-) (comGC) [Bacillus licheniformis strain KNU11]
MNEKGFTLIEMLVVMLVISILLLITIPNVTKHNQSIQKKGCEGLINMVQAQITAYQMDHDGKTPNRAELESEGYIKKNLK
CPNGKAIKISNGKAQAD

Nucleotide


Download         Length: 294 bp        

>NTDB_id=376314 FQB22_RS21350 WP_003183466.1 4132123..4132416(-) (comGC) [Bacillus licheniformis strain KNU11]
GTGAATGAAAAGGGATTTACACTGATAGAAATGTTAGTCGTCATGCTCGTTATCTCCATCCTGCTGTTGATCACCATTCC
GAATGTGACCAAGCATAACCAAAGCATCCAAAAGAAAGGATGCGAAGGATTAATCAATATGGTTCAAGCGCAGATCACGG
CCTATCAGATGGATCATGACGGGAAAACGCCGAACAGGGCGGAGCTTGAATCTGAAGGTTACATAAAAAAGAACTTAAAG
TGTCCGAATGGGAAAGCAATTAAAATTTCAAACGGCAAAGCACAGGCTGATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

44.211

97.938

0.433
  comGC Staphylococcus aureus N315

44.211

97.938

0.433

Multiple sequence alignment