Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G9P51_RS05250 Genome accession   NZ_CP050044
Coordinates   1109269..1109784 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 74-2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1104269..1114784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9P51_RS05205 (G9P51_05225) csrA 1104985..1105170 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  G9P51_RS05235 (G9P51_05255) yqaB 1106628..1107194 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  G9P51_RS05240 (G9P51_05260) - 1107191..1107490 (+) 300 WP_182123332.1 DedA family protein -
  G9P51_RS05245 (G9P51_05265) gshA 1107563..1109119 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  G9P51_RS05250 (G9P51_05270) luxS 1109269..1109784 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  G9P51_RS05255 (G9P51_05275) emrB 1109848..1111386 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  G9P51_RS05260 (G9P51_05280) emrA 1111403..1112575 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  G9P51_RS05265 (G9P51_05285) emrR 1112702..1113232 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  G9P51_RS05270 (G9P51_05295) ygaH 1113323..1113658 (-) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  G9P51_RS05275 (G9P51_05300) ygaZ 1113648..1114385 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=376315 G9P51_RS05250 WP_001130211.1 1109269..1109784(+) (luxS) [Escherichia coli strain 74-2]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=376315 G9P51_RS05250 WP_001130211.1 1109269..1109784(+) (luxS) [Escherichia coli strain 74-2]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment