Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FNS04_RS06885 Genome accession   NZ_CP042162
Coordinates   1334492..1335259 (+) Length   255 a.a.
NCBI ID   WP_065843754.1    Uniprot ID   A0A5L9WQ03
Organism   Campylobacter fetus subsp. fetus strain INIA/17144     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1329492..1340259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNS04_RS06870 (FP572_06810) - 1331363..1332175 (-) 813 WP_002849747.1 HDOD domain-containing protein -
  FNS04_RS06875 (FP572_06815) ilvC 1332322..1333344 (+) 1023 WP_002849745.1 ketol-acid reductoisomerase -
  FNS04_RS06880 (FP572_06820) - 1333345..1334508 (+) 1164 WP_011732090.1 divergent polysaccharide deacetylase family protein -
  FNS04_RS06885 (FP572_06825) dprA 1334492..1335259 (+) 768 WP_065843754.1 DNA-processing protein DprA Machinery gene
  FNS04_RS06890 (FP572_06830) dprB 1335256..1335630 (+) 375 WP_002849740.1 Holliday junction resolvase RuvX Machinery gene
  FNS04_RS06895 (FP572_06835) - 1335638..1336501 (+) 864 WP_144686225.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  FNS04_RS06900 (FP572_06840) - 1336521..1337729 (-) 1209 WP_144686227.1 hypothetical protein -
  FNS04_RS06905 (FP572_06845) queA 1337739..1338758 (-) 1020 WP_144686229.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  FNS04_RS06910 (FP572_06850) tatC 1338755..1339510 (-) 756 WP_002849731.1 twin-arginine translocase subunit TatC -
  FNS04_RS06915 (FP572_06855) tatB 1339510..1339965 (-) 456 WP_002849729.1 Sec-independent protein translocase protein TatB -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28266.38 Da        Isoelectric Point: 5.4056

>NTDB_id=375856 FNS04_RS06885 WP_065843754.1 1334492..1335259(+) (dprA) [Campylobacter fetus subsp. fetus strain INIA/17144]
MDFITDILSLKKLKKPVNKLYYKGNLELLNFPKVAIVGSRKCTSYTKNIVLSLASTLKNYGICVVSGAAIGTDIHAHEGA
FPNTIAVFGNGLNNIYPAQNSKMIEKIYKDALALSEYEPNTFATPWSFLERNRIVVSLSDAVIIAEADIKSGSMSSARLA
LDMGIPLFVLPQRFNESNGTNDLLSKNRANLIADFDEFASKFGSLNSDLSKDDVLEFIKINQNFDECYARFGDALYEYEL
EGKISIDGVYIRILS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=375856 FNS04_RS06885 WP_065843754.1 1334492..1335259(+) (dprA) [Campylobacter fetus subsp. fetus strain INIA/17144]
ATGGACTTTATAACTGATATTTTAAGCTTAAAAAAGCTAAAAAAACCTGTAAATAAACTATATTATAAAGGAAATTTAGA
ACTCTTAAATTTCCCCAAAGTAGCGATAGTCGGCTCGAGAAAATGTACTTCTTATACAAAAAATATTGTTTTGAGTTTAG
CCTCTACTCTTAAAAATTACGGTATTTGCGTAGTTAGCGGAGCGGCTATAGGTACCGATATACATGCTCACGAAGGCGCT
TTTCCAAATACCATCGCAGTCTTTGGAAATGGACTTAATAATATATATCCGGCTCAAAACTCAAAAATGATAGAAAAAAT
TTATAAAGACGCATTGGCTCTTAGCGAGTATGAACCTAATACTTTTGCGACTCCTTGGAGTTTTTTAGAAAGAAACAGAA
TAGTCGTATCCCTAAGCGACGCCGTGATCATAGCAGAAGCGGATATTAAAAGCGGATCAATGTCTAGCGCAAGACTCGCT
TTGGATATGGGAATTCCTCTTTTTGTATTGCCTCAAAGGTTTAATGAGAGCAATGGAACAAATGATCTGCTTAGTAAAAA
TAGGGCGAATTTAATAGCCGATTTTGATGAGTTTGCTTCTAAATTCGGAAGTTTAAACAGTGATTTGAGTAAAGACGATG
TTTTGGAATTTATAAAAATAAATCAAAACTTTGATGAGTGTTACGCGAGATTTGGAGACGCTTTGTATGAATACGAGCTG
GAGGGTAAAATTTCTATAGACGGAGTATATATAAGGATTTTATCTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5L9WQ03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.17

92.157

0.518
  dprA Helicobacter pylori 26695

47.917

94.118

0.451

Multiple sequence alignment