Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   FNS04_RS06890 Genome accession   NZ_CP042162
Coordinates   1335256..1335630 (+) Length   124 a.a.
NCBI ID   WP_002849740.1    Uniprot ID   -
Organism   Campylobacter fetus subsp. fetus strain INIA/17144     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1330256..1340630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNS04_RS06870 (FP572_06810) - 1331363..1332175 (-) 813 WP_002849747.1 HDOD domain-containing protein -
  FNS04_RS06875 (FP572_06815) ilvC 1332322..1333344 (+) 1023 WP_002849745.1 ketol-acid reductoisomerase -
  FNS04_RS06880 (FP572_06820) - 1333345..1334508 (+) 1164 WP_011732090.1 divergent polysaccharide deacetylase family protein -
  FNS04_RS06885 (FP572_06825) dprA 1334492..1335259 (+) 768 WP_065843754.1 DNA-processing protein DprA Machinery gene
  FNS04_RS06890 (FP572_06830) dprB 1335256..1335630 (+) 375 WP_002849740.1 Holliday junction resolvase RuvX Machinery gene
  FNS04_RS06895 (FP572_06835) - 1335638..1336501 (+) 864 WP_144686225.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  FNS04_RS06900 (FP572_06840) - 1336521..1337729 (-) 1209 WP_144686227.1 hypothetical protein -
  FNS04_RS06905 (FP572_06845) queA 1337739..1338758 (-) 1020 WP_144686229.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  FNS04_RS06910 (FP572_06850) tatC 1338755..1339510 (-) 756 WP_002849731.1 twin-arginine translocase subunit TatC -
  FNS04_RS06915 (FP572_06855) tatB 1339510..1339965 (-) 456 WP_002849729.1 Sec-independent protein translocase protein TatB -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13694.09 Da        Isoelectric Point: 8.4803

>NTDB_id=375857 FNS04_RS06890 WP_002849740.1 1335256..1335630(+) (dprB) [Campylobacter fetus subsp. fetus strain INIA/17144]
MIVAIDVGLKRIGVAVAVLPTVVLPSEPILRKNRNQAAKDTLKMLKEKNATKLVVGLPKGGSCEDEMERRIKHFISLVGF
DSEIIYVDEAYSSCEASELSKDSKDGRFDSIAAMVILKRYLNIL

Nucleotide


Download         Length: 375 bp        

>NTDB_id=375857 FNS04_RS06890 WP_002849740.1 1335256..1335630(+) (dprB) [Campylobacter fetus subsp. fetus strain INIA/17144]
TTGATAGTAGCTATCGATGTCGGACTAAAAAGAATAGGAGTTGCGGTTGCGGTTTTACCGACTGTTGTACTTCCTAGCGA
ACCTATTTTACGTAAAAATCGCAATCAGGCGGCGAAAGATACTTTAAAAATGTTAAAAGAAAAAAATGCGACAAAACTAG
TAGTCGGCTTGCCAAAAGGCGGCAGCTGCGAGGATGAAATGGAAAGACGAATTAAGCATTTTATCTCTTTAGTCGGTTTT
GATTCAGAGATAATTTATGTTGATGAAGCTTATAGCAGCTGCGAAGCTAGCGAACTGTCAAAAGATTCTAAAGACGGTAG
ATTTGATAGCATTGCCGCTATGGTGATTTTAAAAAGATATCTAAATATTTTGTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

50.388

100

0.524

Multiple sequence alignment