Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FPS98_RS11775 Genome accession   NZ_CP042161
Coordinates   2515988..2517712 (-) Length   574 a.a.
NCBI ID   WP_144616183.1    Uniprot ID   A0A517I6U1
Organism   Brevibacillus brevis strain HK544     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2510988..2522712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPS98_RS11755 (FPS98_11755) - 2511003..2511725 (-) 723 WP_144616181.1 hypothetical protein -
  FPS98_RS11765 (FPS98_11765) spo0A 2513364..2514152 (-) 789 WP_007720793.1 sporulation transcription factor Spo0A -
  FPS98_RS11770 (FPS98_11770) spoIVB 2514411..2515745 (-) 1335 WP_069844632.1 SpoIVB peptidase -
  FPS98_RS11775 (FPS98_11775) recN 2515988..2517712 (-) 1725 WP_144616183.1 DNA repair protein RecN Machinery gene
  FPS98_RS11780 (FPS98_11780) ahrC 2517729..2518178 (-) 450 WP_012686040.1 transcriptional regulator AhrC/ArgR -
  FPS98_RS11785 (FPS98_11785) - 2518184..2519041 (-) 858 WP_144616185.1 NAD(+)/NADH kinase -
  FPS98_RS11790 (FPS98_11790) - 2519169..2519987 (-) 819 WP_144616188.1 TlyA family RNA methyltransferase -
  FPS98_RS11795 (FPS98_11795) dxs 2519984..2521870 (-) 1887 WP_144616190.1 1-deoxy-D-xylulose-5-phosphate synthase -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64649.51 Da        Isoelectric Point: 4.7192

>NTDB_id=375819 FPS98_RS11775 WP_144616183.1 2515988..2517712(-) (recN) [Brevibacillus brevis strain HK544]
MLVELSIRNFAIIKSVTVSFQKGLNILTGETGAGKSIIIDALGLLLGGRASADFVRYGEPRAEVEGLFELPPGHPGLDVC
KNVGVQIEQDGMLVVRRDISNQGKSIIRINGQLVTLAMLRELGPWLVTVHGQHDTHMLMQSDKHINWLDAYGEGALGSAK
QEYGTLYAAYRKTKQDLERIARNDRELVQRIDLLQYQLDEIEGATLTPGEDEKLMQQRKKWMNIEKVYSTIQDAYRALHG
DQKGMDWLGHAMGELERGVNYEEQLVPILEMVQSAYYQIEDVVHNLRQLSYQMDFEPEQLAEVERRLDQIQSLKRKYGKS
VDDILEYAATIQDELDDMHHYEDRLQQVEKQLQEFAADLAVEALELSVIRSECAGQLAQEIEQQLKELHMERARFAIDVR
QTPDDDGVEIDGIKRFVDANGMDQIEFLISPNPGEPLRPLAKIASGGELSRVMLAIKTILAGTDQVETLIFDEVDTGVSG
RAAQAIAEKLARVAGQRQVLCITHLPQVASMADAHFLIKKEMSENETETRVHRLSDDERVTELARMLSGAEVTAKTEEHA
REMILLGRERKTVS

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=375819 FPS98_RS11775 WP_144616183.1 2515988..2517712(-) (recN) [Brevibacillus brevis strain HK544]
ATGCTAGTGGAACTCTCGATCCGAAATTTTGCCATCATCAAATCAGTGACGGTCTCTTTCCAAAAAGGCTTAAACATCCT
GACAGGGGAGACTGGTGCCGGTAAATCCATCATTATTGATGCGCTAGGACTATTGTTAGGAGGCCGGGCTTCAGCTGATT
TTGTCCGTTACGGTGAGCCGCGTGCAGAAGTGGAAGGGCTGTTTGAATTGCCTCCTGGTCATCCCGGACTTGACGTTTGT
AAGAATGTCGGTGTCCAGATTGAGCAAGACGGAATGCTCGTGGTACGCCGAGATATATCGAATCAAGGGAAGAGTATCAT
TCGAATTAATGGCCAGCTCGTAACTCTCGCTATGCTGCGTGAGTTAGGGCCATGGCTGGTTACGGTGCATGGACAACACG
ATACGCATATGCTGATGCAGTCAGACAAGCATATCAATTGGCTCGATGCATATGGGGAGGGCGCATTGGGATCTGCGAAG
CAAGAGTACGGTACCCTGTATGCTGCTTACCGCAAAACAAAGCAAGATCTGGAGCGTATAGCACGTAATGATCGGGAGCT
GGTACAGCGCATCGATCTATTGCAATATCAGCTGGATGAAATTGAGGGGGCAACTCTCACGCCTGGCGAAGACGAGAAGC
TCATGCAGCAGCGGAAAAAGTGGATGAACATTGAAAAAGTTTATTCAACGATTCAAGATGCATACCGCGCATTGCATGGT
GACCAAAAGGGCATGGATTGGTTAGGCCATGCGATGGGAGAGCTTGAGCGTGGTGTGAACTACGAAGAACAGCTCGTTCC
GATTTTGGAGATGGTCCAATCGGCATACTACCAGATAGAAGATGTGGTACATAACCTTCGTCAATTGTCGTACCAAATGG
ATTTTGAACCGGAGCAGTTGGCAGAAGTAGAACGTCGTCTTGATCAAATCCAGTCATTAAAACGAAAGTATGGCAAAAGT
GTAGACGATATTTTGGAGTACGCTGCCACGATTCAGGATGAATTGGATGACATGCATCACTACGAAGACCGCCTTCAGCA
GGTGGAAAAGCAATTGCAGGAGTTTGCAGCCGATTTGGCAGTGGAGGCATTGGAGTTGTCGGTCATTCGTTCCGAATGTG
CAGGACAACTTGCACAAGAAATCGAGCAGCAGCTAAAAGAACTGCACATGGAGCGTGCTCGTTTTGCCATCGACGTCAGA
CAGACGCCGGATGATGACGGGGTAGAAATCGACGGAATCAAGCGCTTCGTAGATGCGAACGGAATGGATCAGATCGAGTT
TTTAATCTCACCTAACCCGGGTGAGCCATTGCGTCCTTTAGCGAAGATTGCTTCCGGCGGGGAGCTGTCTCGTGTCATGC
TGGCCATTAAAACGATTTTGGCGGGGACGGACCAAGTGGAGACCCTTATTTTTGATGAAGTCGACACTGGTGTCAGTGGA
AGAGCAGCTCAAGCGATAGCAGAAAAACTCGCCCGAGTCGCTGGGCAGCGCCAAGTCCTGTGCATAACGCACTTGCCACA
GGTCGCATCCATGGCAGACGCGCATTTTCTGATCAAAAAGGAAATGAGCGAGAATGAAACGGAGACGCGGGTGCATCGTT
TGTCTGATGATGAACGGGTAACGGAGCTGGCTCGCATGCTAAGCGGGGCAGAGGTAACAGCAAAAACAGAAGAACATGCG
CGAGAGATGATCCTTCTCGGGCGTGAACGAAAGACTGTCAGCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A517I6U1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.264

100

0.484

Multiple sequence alignment