Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   FPS98_RS08400 Genome accession   NZ_CP042161
Coordinates   1782016..1782729 (-) Length   237 a.a.
NCBI ID   WP_144615207.1    Uniprot ID   -
Organism   Brevibacillus brevis strain HK544     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1777016..1787729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPS98_RS08375 (FPS98_08375) tenA 1777311..1777991 (+) 681 WP_144615197.1 thiaminase II -
  FPS98_RS08380 (FPS98_08380) - 1777976..1778758 (+) 783 WP_144615200.1 ABC transporter ATP-binding protein -
  FPS98_RS08385 (FPS98_08385) - 1778758..1779516 (+) 759 WP_144619529.1 ABC transporter permease -
  FPS98_RS08390 (FPS98_08390) - 1779513..1780544 (+) 1032 WP_144615202.1 ABC transporter substrate-binding protein -
  FPS98_RS08395 (FPS98_08395) - 1780633..1782015 (-) 1383 WP_144615205.1 sensor histidine kinase -
  FPS98_RS08400 (FPS98_08400) scnR 1782016..1782729 (-) 714 WP_144615207.1 response regulator transcription factor Regulator
  FPS98_RS08405 (FPS98_08405) - 1782883..1783794 (+) 912 WP_144615209.1 ABC transporter ATP-binding protein -
  FPS98_RS08410 (FPS98_08410) - 1783794..1784543 (+) 750 WP_144615211.1 ABC transporter permease -
  FPS98_RS08415 (FPS98_08415) - 1784556..1785287 (+) 732 WP_144615214.1 ABC transporter permease -
  FPS98_RS08420 (FPS98_08420) - 1785550..1786092 (-) 543 WP_144615216.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27102.51 Da        Isoelectric Point: 5.7230

>NTDB_id=375812 FPS98_RS08400 WP_144615207.1 1782016..1782729(-) (scnR) [Brevibacillus brevis strain HK544]
MEEWKQKKALIVEDELEIRNMIDGFLRKEGFSRIFHAGSCKEALVICASDKPDVAILDVMLPDGDGFGLLTSIRRFSQIP
VIFLSARGEDEDRLLGLGLGADDYIVKPFLPRELVLRLLVILRRVYAPPKIDRLPVFQLGDSTIDLEAAIVTRDHHEYAL
TAKEHALLRKLYENRGRIVTSDALCQSVWGDDYYGYENTLMVHMRRIREKIEPCPSTPEYLLTVRGLGYKLLVKEEL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=375812 FPS98_RS08400 WP_144615207.1 1782016..1782729(-) (scnR) [Brevibacillus brevis strain HK544]
ATGGAAGAATGGAAACAGAAAAAAGCGCTCATCGTGGAAGATGAGCTTGAAATCAGAAATATGATCGATGGATTTTTGCG
TAAGGAAGGATTCTCTCGTATTTTTCATGCGGGTAGTTGTAAAGAGGCGTTAGTGATTTGCGCTTCGGACAAGCCTGATG
TCGCGATCCTGGATGTCATGCTGCCTGATGGAGATGGATTTGGACTTCTGACTTCGATCCGTCGCTTCTCGCAAATCCCT
GTTATTTTTCTTTCAGCAAGAGGGGAAGATGAAGATCGATTGCTCGGACTTGGCCTGGGGGCTGACGACTATATTGTGAA
GCCATTTTTACCACGTGAGCTCGTTCTTCGTCTCTTGGTCATTTTACGACGCGTTTACGCTCCCCCCAAAATCGATCGTC
TGCCCGTTTTCCAACTTGGTGACAGTACGATCGATTTGGAGGCGGCAATCGTGACGAGAGATCACCACGAATACGCTTTG
ACCGCCAAGGAACACGCACTCTTGCGAAAACTCTATGAAAATCGGGGACGAATCGTCACGAGCGATGCCCTTTGCCAATC
CGTATGGGGTGATGATTACTACGGGTATGAAAACACGCTGATGGTTCATATGCGGCGCATTCGCGAAAAGATCGAGCCTT
GTCCGTCCACTCCTGAATATTTACTGACAGTAAGAGGACTCGGATACAAATTACTCGTAAAGGAAGAGTTGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

51.304

97.046

0.498
  micA Streptococcus pneumoniae Cp1015

42.105

96.203

0.405
  vicR Streptococcus mutans UA159

41.485

96.624

0.401

Multiple sequence alignment