Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G9W34_RS17350 Genome accession   NZ_CP049852
Coordinates   3552698..3553213 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain UPEC-774U/190308     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3547698..3558213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9W34_RS17325 (G9W34_17275) ygaH 3548113..3548448 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  G9W34_RS17330 (G9W34_17280) emrR 3548539..3549069 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  G9W34_RS17335 (G9W34_17285) emrA 3549196..3550368 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  G9W34_RS17340 (G9W34_17290) emrB 3550385..3551923 (+) 1539 WP_001539415.1 multidrug efflux MFS transporter permease subunit EmrB -
  G9W34_RS17345 (G9W34_17295) tnpA 3552103..3552561 (+) 459 WP_000526115.1 IS200/IS605-like element IS200C family transposase -
  G9W34_RS17350 (G9W34_17300) luxS 3552698..3553213 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  G9W34_RS17355 (G9W34_17305) gshA 3553363..3554919 (-) 1557 WP_001539417.1 glutamate--cysteine ligase -
  G9W34_RS17360 (G9W34_17310) yqaA 3554992..3555420 (-) 429 WP_001287462.1 YqaA family protein -
  G9W34_RS17365 (G9W34_17315) yqaB 3555417..3555983 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  G9W34_RS17395 (G9W34_17345) csrA 3557173..3557358 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=375531 G9W34_RS17350 WP_001130208.1 3552698..3553213(-) (luxS) [Escherichia coli strain UPEC-774U/190308]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=375531 G9W34_RS17350 WP_001130208.1 3552698..3553213(-) (luxS) [Escherichia coli strain UPEC-774U/190308]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCAAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment