Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   FPT06_RS04905 Genome accession   NZ_CP041994
Coordinates   971751..972668 (-) Length   305 a.a.
NCBI ID   WP_002935296.1    Uniprot ID   -
Organism   Streptococcus suis strain INT-01     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 966751..977668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPT06_RS04890 (FPT06_04890) - 968553..970076 (-) 1524 WP_004194221.1 Heme/copper-type cytochrome/quinol oxidase subunit 1 -
  FPT06_RS04900 (FPT06_04900) - 970245..971486 (-) 1242 WP_013730059.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  FPT06_RS04905 (FPT06_04905) comR 971751..972668 (-) 918 WP_002935296.1 helix-turn-helix domain-containing protein Regulator
  FPT06_RS04910 (FPT06_04910) - 972915..973553 (-) 639 WP_002935298.1 HAD-IA family hydrolase -
  FPT06_RS04915 (FPT06_04915) - 973555..974301 (-) 747 WP_002935299.1 GNAT family N-acetyltransferase -
  FPT06_RS04920 (FPT06_04920) ruvB 974301..975302 (-) 1002 WP_013730058.1 Holliday junction branch migration DNA helicase RuvB -
  FPT06_RS10720 - 975597..975770 (-) 174 WP_002935301.1 hypothetical protein -
  FPT06_RS04925 (FPT06_04925) - 975872..977584 (-) 1713 Protein_944 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 36252.32 Da        Isoelectric Point: 4.6744

>NTDB_id=375231 FPT06_RS04905 WP_002935296.1 971751..972668(-) (comR) [Streptococcus suis strain INT-01]
MNDKEFGQRVRQLRESASMTREQFCDDELELSVRQLTRIEAGASKPTFSKIQYIATRLGMGLYELMPDYVSLPERYSKLK
FDVLRTPTYGNEDLAEKRDAMMTEIYDDYYDELPEEEKIVVDTLCSLFDVLDTDSQEYGKEILDDYLHQSYHRSKLSIND
LMILRLFIEHCQLEDLSVGTSNYALFTDLIEKLPQSIYDVHSESLFIVRDLFLAIVRILFSKELYNHIPVYIEKIENIME
LSQDFQKKPILNLVKWKYELKVQHNHEIAERYYNEAITFASLLNQFHLKEKLQMEWEKDTQSLKR

Nucleotide


Download         Length: 918 bp        

>NTDB_id=375231 FPT06_RS04905 WP_002935296.1 971751..972668(-) (comR) [Streptococcus suis strain INT-01]
ATGAACGATAAGGAGTTTGGACAGCGTGTGCGTCAATTACGAGAATCTGCTAGTATGACACGTGAACAGTTTTGTGACGA
TGAACTGGAACTCTCTGTGCGCCAATTAACTCGTATTGAAGCAGGTGCTTCCAAGCCGACTTTTTCAAAGATTCAGTATA
TTGCAACTCGTTTAGGTATGGGACTTTACGAGCTTATGCCAGATTATGTATCTTTACCCGAAAGATATTCCAAGCTGAAG
TTTGATGTGCTTCGCACCCCAACTTATGGTAATGAAGATTTGGCGGAAAAGCGAGATGCCATGATGACAGAAATCTATGA
CGATTATTATGATGAATTGCCTGAGGAGGAGAAAATAGTTGTAGACACCCTATGTTCCCTATTTGATGTATTGGATACAG
ATAGCCAGGAATACGGTAAAGAAATTCTTGATGATTATTTACATCAAAGCTATCACCGTTCCAAACTATCTATAAACGAT
TTAATGATTTTGCGATTATTTATTGAACATTGTCAGTTGGAGGATTTATCTGTTGGAACTTCCAATTATGCTTTATTTAC
AGATTTGATAGAGAAATTGCCTCAATCAATCTATGATGTACATTCGGAATCCTTATTCATTGTCCGCGATTTATTTCTAG
CTATTGTTCGTATTTTATTTTCGAAGGAGTTGTATAATCATATTCCAGTCTATATAGAAAAAATAGAAAACATCATGGAA
TTATCACAAGATTTTCAGAAGAAGCCAATTCTAAATCTTGTGAAATGGAAATATGAATTAAAGGTACAACATAATCATGA
AATTGCTGAGAGGTACTATAATGAAGCGATTACATTTGCCAGCCTACTAAATCAATTTCACTTGAAAGAAAAACTGCAAA
TGGAATGGGAAAAAGATACGCAGAGTCTAAAAAGATGA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_31)

(5-60)

ComR tetratricopeptide (ComR_TPR)

(73-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis D9

100

100

1
  comR Streptococcus suis P1/7

62.126

98.689

0.613
  comR Streptococcus suis 05ZYH33

62.126

98.689

0.613
  comR Streptococcus mutans UA159

37

98.361

0.364

Multiple sequence alignment