Detailed information NTG0037521

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: TRAD_RS03805
• Genome accession: NC_014221
• Coordinates: 829545..830774 (+)
• Length: 409 a.a.
• NCBI ID: WP_013177270.1
• Uniprot ID: D7CU00
• Organism: Truepera radiovictrix DSM 17093
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 824545..835774

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TRAD_RS03775 (Trad_0757)	-	824815..825288 (+)	474	WP_013177264.1	tRNA (cytidine(34)-2'-O)-methyltransferase	-
TRAD_RS03780 (Trad_0758)	-	825306..826367 (-)	1062	WP_013177265.1	M42 family metallopeptidase	-
TRAD_RS03785 (Trad_0759)	-	826485..827018 (+)	534	WP_013177266.1	GNAT family N-acetyltransferase	-
TRAD_RS03790 (Trad_0760)	-	827068..828087 (-)	1020	WP_013177267.1	YpdA family putative bacillithiol disulfide reductase	-
TRAD_RS03795 (Trad_0761)	nth	828168..828812 (-)	645	WP_013177268.1	endonuclease III	-
TRAD_RS03800 (Trad_0762)	-	828863..829468 (+)	606	WP_013177269.1	hypothetical protein	-
TRAD_RS03805 (Trad_0763)	pilC	829545..830774 (+)	1230	WP_013177270.1	type II secretion system F family protein	Machinery gene
TRAD_RS15050 (Trad_0764)	-	831215..833500 (-)	2286	WP_013177271.1	diguanylate cyclase	-
TRAD_RS03815 (Trad_0765)	-	833720..835318 (+)	1599	WP_013177272.1	LysM peptidoglycan-binding domain-containing protein	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 43921.77 Da
• Isoelectric Point: 9.6912

>NTDB_id=37521 TRAD_RS03805 WP_013177270.1 829545..830774(+) (pilC) [Truepera radiovictrix DSM 17093]
MPLYAYKARDRSGRLVEAVMEAPTQRDVALALREKDLLPTEIAPPKTGLHADVKLPAWLSVGGKPNLRDVTVFSRQFATV
INAGLPVVQSLAILQRQAEKDALKEALKRIREEVETGTPLSEALAKHPKLFGRLYVYLVRAGEASGNLDSILERIALYQE
KQAALRGKLRSALTYPTVVLLIALGVTYFLLTGIVPQFAGILTQLGGELPLMTRVLIAISDFLRGQWWLLLLLAVGGVVG
LGAFYRTARGRRAIDGALLKAPVLGKLVQKTAIASFSSTFGLLLKSGVNILEAIDITKGTAGNAIVEDVLEEAKGAVQRG
EQMSLTLLARPKVFPPLVASMVAIGEETGAVDAMMEKVASFYEREVNEAVESLTAALEPLLIVFLGGVVGFIVAGMFLPM
FAIIGQLGG

Nucleotide

• Length: 1230 bp

>NTDB_id=37521 TRAD_RS03805 WP_013177270.1 829545..830774(+) (pilC) [Truepera radiovictrix DSM 17093]
ATGCCGCTCTACGCTTACAAGGCCAGGGACCGCTCCGGTCGCCTCGTGGAGGCGGTGATGGAGGCCCCCACGCAGCGCGA
CGTCGCGCTGGCGCTACGCGAAAAGGACCTCCTGCCCACCGAGATCGCCCCCCCGAAGACGGGGTTGCACGCCGACGTCA
AGCTGCCGGCGTGGCTGAGCGTCGGGGGAAAACCCAACCTGCGCGACGTCACGGTGTTTAGCCGCCAGTTCGCGACGGTG
ATCAACGCGGGGTTGCCGGTCGTGCAGTCGCTGGCGATCTTGCAGCGCCAAGCCGAAAAGGACGCCCTCAAAGAGGCGCT
CAAAAGGATCCGCGAGGAGGTCGAGACCGGCACGCCCCTCTCGGAGGCGCTCGCAAAGCACCCCAAGCTCTTCGGTCGGC
TCTACGTCTACCTCGTACGGGCGGGGGAGGCGTCGGGCAACCTAGACAGCATCCTAGAGCGCATCGCGCTCTACCAGGAG
AAGCAGGCGGCGCTGCGCGGCAAGTTGCGGAGCGCTCTAACCTACCCCACCGTGGTGCTCCTTATCGCCCTCGGCGTCAC
CTACTTTCTGCTGACGGGGATCGTGCCGCAGTTCGCGGGGATCTTGACGCAGCTCGGCGGTGAGCTGCCCCTCATGACGC
GCGTGCTGATCGCCATCAGCGACTTTTTGCGGGGGCAGTGGTGGCTGCTGCTCCTGCTCGCTGTCGGCGGCGTGGTGGGG
TTGGGGGCGTTTTACCGTACCGCTCGGGGGCGCCGCGCGATCGACGGCGCGCTCCTCAAAGCGCCGGTGCTGGGCAAGCT
GGTGCAAAAAACCGCCATCGCGAGCTTTTCGAGCACCTTTGGGCTCCTTCTCAAGAGCGGCGTCAACATCCTCGAGGCGA
TCGACATCACCAAGGGCACAGCCGGCAACGCGATCGTCGAGGACGTGCTCGAGGAGGCCAAAGGGGCGGTGCAGCGCGGC
GAGCAGATGAGCCTGACGCTGCTCGCGCGGCCCAAGGTCTTTCCGCCTCTGGTCGCTTCGATGGTCGCCATCGGCGAGGA
GACGGGCGCGGTCGACGCGATGATGGAAAAAGTCGCGAGCTTTTACGAGCGCGAGGTCAACGAGGCCGTCGAGAGCCTCA
CGGCGGCGCTGGAGCCCCTGCTGATCGTCTTCTTGGGCGGCGTCGTCGGGTTTATCGTGGCGGGGATGTTCCTGCCGATG
TTCGCGATTATCGGGCAGCTGGGTGGGTAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (73-196)

• Type II secretion system (T2SS), protein F (T2SSF) (276-399)

3D structure

• AlphaFold DB: D7CU00

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	59.951	99.511	0.597
pilC	Legionella pneumophila strain ERS1305867	36.7	99.267	0.364
pilC	Vibrio cholerae strain A1552	36.253	100	0.364