Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FP433_RS00320 Genome accession   NZ_CP041983
Coordinates   68236..68754 (+) Length   172 a.a.
NCBI ID   WP_265483760.1    Uniprot ID   -
Organism   Lactobacillus sp. PV012     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 63236..73754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FP433_RS00305 (FP433_00300) gyrB 63297..65258 (+) 1962 WP_265486747.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  FP433_RS00310 (FP433_00305) gyrA 65268..67730 (+) 2463 WP_265486748.1 DNA gyrase subunit A -
  FP433_RS00315 (FP433_00310) rpsF 67906..68202 (+) 297 WP_265486749.1 30S ribosomal protein S6 -
  FP433_RS00320 (FP433_00315) ssb 68236..68754 (+) 519 WP_265483760.1 single-stranded DNA-binding protein Machinery gene
  FP433_RS00325 (FP433_00320) rpsR 68778..69014 (+) 237 WP_008471430.1 30S ribosomal protein S18 -
  FP433_RS00330 (FP433_00325) - 69119..70036 (+) 918 WP_265483759.1 magnesium transporter CorA family protein -
  FP433_RS00335 (FP433_00330) - 70109..72139 (+) 2031 WP_265486750.1 DHH family phosphoesterase -
  FP433_RS00340 (FP433_00335) rplI 72142..72597 (+) 456 WP_265483758.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18702.31 Da        Isoelectric Point: 4.4997

>NTDB_id=375169 FP433_RS00320 WP_265483760.1 68236..68754(+) (ssb) [Lactobacillus sp. PV012]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRNYTNSQGERQTDFINCVIWRKAAETFANFTSKGSLVGVEGSIQTR
SYDDKDGKRVYVTEVIVSDFSFLESRRERENRQANGGGYPQPTPSTNQPNTNNFGGNTAPGTGNNGASAPQPQDPFADSN
ESIDISDNDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=375169 FP433_RS00320 WP_265483760.1 68236..68754(+) (ssb) [Lactobacillus sp. PV012]
ATGATTAATAATGTTGTACTAGTTGGCCGATTAACACGTGACCCTGATTTACGTACTACTGGAAGTGGAATATCAGTAGC
TACGTTTACTTTGGCTGTAGATAGAAATTATACTAATAGTCAGGGTGAACGCCAAACTGACTTTATCAACTGTGTTATTT
GGCGTAAAGCAGCAGAAACTTTTGCTAACTTTACTTCAAAGGGTTCATTAGTTGGTGTTGAAGGTAGTATTCAAACTAGA
AGTTATGATGATAAAGATGGAAAAAGAGTTTATGTTACTGAGGTAATTGTAAGTGATTTTTCATTCTTAGAATCACGCCG
TGAACGTGAAAATCGTCAAGCAAATGGTGGTGGGTATCCACAACCAACTCCAAGCACAAACCAACCAAATACAAATAATT
TTGGTGGTAATACTGCTCCGGGAACTGGAAATAATGGAGCATCGGCTCCACAACCACAAGATCCATTTGCTGATTCTAAT
GAATCTATTGATATTTCAGATAATGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.803

100

0.581
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.575

100

0.512

Multiple sequence alignment