Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FPL17_RS16185 Genome accession   NZ_CP041970
Coordinates   3512813..3513517 (-) Length   234 a.a.
NCBI ID   WP_032864339.1    Uniprot ID   -
Organism   Acinetobacter dispersus strain NCCP 16014     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3507813..3518517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL17_RS16150 (FPL17_16345) - 3508485..3509162 (+) 678 WP_005185313.1 outer membrane lipid asymmetry maintenance protein MlaD -
  FPL17_RS16155 (FPL17_16350) - 3509182..3509814 (+) 633 WP_005185306.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  FPL17_RS16160 (FPL17_16355) - 3509826..3510113 (+) 288 WP_005185301.1 STAS domain-containing protein -
  FPL17_RS16165 (FPL17_16360) - 3510169..3510714 (-) 546 WP_159886914.1 hypothetical protein -
  FPL17_RS16170 (FPL17_16365) - 3510705..3511718 (-) 1014 WP_005209109.1 magnesium and cobalt transport protein CorA -
  FPL17_RS16175 (FPL17_16370) - 3511890..3512474 (+) 585 WP_159886186.1 TIGR00730 family Rossman fold protein -
  FPL17_RS16180 (FPL17_16375) - 3512485..3512880 (+) 396 WP_005185289.1 NUDIX hydrolase -
  FPL17_RS16185 (FPL17_16380) comF 3512813..3513517 (-) 705 WP_032864339.1 ComF family protein Machinery gene
  FPL17_RS16190 (FPL17_16385) recG 3513510..3515555 (-) 2046 WP_159886188.1 ATP-dependent DNA helicase RecG -
  FPL17_RS16195 (FPL17_16390) - 3515574..3516392 (+) 819 WP_159886190.1 NAD-dependent epimerase/dehydratase family protein -
  FPL17_RS16200 (FPL17_16395) - 3516518..3517495 (+) 978 WP_159886192.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26767.28 Da        Isoelectric Point: 9.6544

>NTDB_id=375102 FPL17_RS16185 WP_032864339.1 3512813..3513517(-) (comF) [Acinetobacter dispersus strain NCCP 16014]
MFKRLGISAQQVFDYFTPCSLCDIGMKRQFGVCQSCWQQLPWLKQSIERNQQQVLVACHYHYPIDRIIQQFKYEQKLHHQ
RLLNGLLLQLKLPKVHAIVPMPISIDRLTERGFNQALLLSKALSKSLNVPVWQPVQRLAQHSQKGLSRLERLEDIEQQFI
AAPPNQIRYRKVLIIDDVLTTGSSISALSKVLTQLGCQQIYSACVAAAQNPAINSLDFADTMESQFLSLRVPIK

Nucleotide


Download         Length: 705 bp        

>NTDB_id=375102 FPL17_RS16185 WP_032864339.1 3512813..3513517(-) (comF) [Acinetobacter dispersus strain NCCP 16014]
ATGTTTAAACGACTTGGCATATCAGCACAGCAAGTTTTTGATTATTTTACACCGTGCAGTCTCTGCGACATTGGTATGAA
ACGCCAATTTGGTGTTTGTCAAAGTTGCTGGCAACAACTGCCTTGGTTAAAGCAAAGTATCGAGCGTAATCAGCAACAGG
TCTTGGTTGCATGCCATTATCACTATCCGATTGATCGGATCATTCAACAGTTTAAATATGAGCAAAAACTTCATCATCAA
AGACTGTTAAATGGTTTGCTATTACAACTTAAACTACCGAAAGTGCATGCGATTGTACCTATGCCCATTTCGATTGATCG
ACTAACAGAACGTGGCTTTAATCAGGCCCTTCTACTCTCCAAAGCATTGAGCAAAAGTTTGAATGTGCCAGTTTGGCAAC
CAGTACAACGCTTGGCGCAGCACTCACAAAAAGGCTTATCCCGTTTAGAGCGACTGGAAGATATTGAACAACAATTTATT
GCTGCACCACCAAATCAAATTCGTTATCGCAAAGTACTCATTATCGATGATGTACTCACCACAGGCAGTTCGATTAGTGC
TTTATCTAAAGTACTGACCCAACTTGGCTGCCAGCAGATCTACAGTGCCTGCGTAGCAGCCGCACAAAATCCAGCAATCA
ACTCACTCGATTTTGCTGACACCATGGAATCACAATTTCTTTCGTTAAGGGTGCCAATAAAGTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(156-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

65.566

90.598

0.594
  comF Acinetobacter baumannii D1279779

65.094

90.598

0.59

Multiple sequence alignment