Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FPL17_RS15150 Genome accession   NZ_CP041970
Coordinates   3294539..3295120 (+) Length   193 a.a.
NCBI ID   WP_005297510.1    Uniprot ID   -
Organism   Acinetobacter dispersus strain NCCP 16014     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3289539..3300120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL17_RS15125 (FPL17_15305) - 3289570..3289923 (+) 354 WP_004803688.1 DUF1304 domain-containing protein -
  FPL17_RS15130 (FPL17_15310) - 3290230..3290964 (+) 735 WP_159885940.1 hypothetical protein -
  FPL17_RS15135 (FPL17_15315) tenA 3291044..3291712 (-) 669 WP_159885942.1 thiaminase II -
  FPL17_RS15140 (FPL17_15320) - 3291885..3292967 (+) 1083 WP_159885944.1 DUF475 domain-containing protein -
  FPL17_RS15145 (FPL17_15325) - 3293126..3294487 (+) 1362 WP_159885946.1 MFS transporter -
  FPL17_RS15150 (FPL17_15330) ssb 3294539..3295120 (+) 582 WP_005297510.1 single-stranded DNA-binding protein Machinery gene
  FPL17_RS15155 - 3295448..3295588 (-) 141 WP_159885948.1 hypothetical protein -
  FPL17_RS15160 (FPL17_15335) - 3295659..3297308 (-) 1650 WP_159885950.1 LGFP repeat-containing protein -
  FPL17_RS19025 - 3297493..3297938 (-) 446 Protein_2987 transposase -
  FPL17_RS15170 (FPL17_15345) - 3298059..3298985 (-) 927 WP_159885954.1 LysR substrate-binding domain-containing protein -
  FPL17_RS15175 (FPL17_15350) ycaC 3299055..3299681 (-) 627 WP_004657244.1 isochorismate family cysteine hydrolase YcaC -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21161.89 Da        Isoelectric Point: 6.4819

>NTDB_id=375092 FPL17_RS15150 WP_005297510.1 3294539..3295120(+) (ssb) [Acinetobacter dispersus strain NCCP 16014]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWMDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQGEQSGGDFNQPRFNNNNNQGGGYQNTGYNNNNNQGGYGQGGGNQGNY
AGSPQAGNGFNTPKAAPQPAAAAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=375092 FPL17_RS15150 WP_005297510.1 3294539..3295120(+) (ssb) [Acinetobacter dispersus strain NCCP 16014]
ATGCGTGGTGTGAATAAAGTTATTTTAGTAGGTACTTTAGGTAAAGATCCGGAAACAAAAACTTTTCCAAATGGTGGATC
ATTAACTCAATTCTCGATTGCGACAAGTGAATCGTGGATGGACAAAAGTACAGGTGAGCGTAAAGAGCAAACAGAATGGC
ACCGTATCGTGTTACATAACCGTTTAGGTGAAATTGCGCAGCAATATCTGCGTAAAGGCTCAAAAGTGTATATCGAAGGT
TCATTGCGTACCCGTCAATGGACAGACCAAAATGGTCAAGAGCGCTACAGCACTGAAATTCGTGGCGATCAAATGCAAAT
GCTCGATAGCCGTCAACAAGGCGAGCAGAGCGGTGGTGACTTTAACCAACCTCGTTTTAATAACAATAATAACCAAGGTG
GCGGTTACCAAAATACAGGCTATAACAATAACAACAATCAAGGTGGTTATGGTCAAGGCGGTGGCAATCAAGGCAATTAT
GCGGGTAGCCCTCAAGCAGGTAATGGTTTTAATACACCAAAAGCTGCACCACAACCAGCTGCAGCAGCACCTGCGGATTT
AGATGACGATTTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54.592

100

0.554
  ssb Vibrio cholerae strain A1552

44.828

100

0.472
  ssb Neisseria meningitidis MC58

38.542

99.482

0.383
  ssb Neisseria gonorrhoeae MS11

38.542

99.482

0.383

Multiple sequence alignment